View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12039_high_24 (Length: 335)
Name: NF12039_high_24
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 43147010 - 43147104
Alignment:
| Q |
15 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43147010 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattatatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
43147104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 43147245 - 43147314
Alignment:
| Q |
250 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43147245 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgt |
43147314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 39362723 - 39362791
Alignment:
| Q |
250 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
39362723 |
agttgagtgcattatgggagtgtttggcccagcttattgctgac-ttttctagtccttaagagaagttgt |
39362791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 39362573 - 39362631
Alignment:
| Q |
17 |
gaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaac |
75 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
39362573 |
gaatgaagttatcatgaaacaaatatagaaaagacgtgtaaaactaaatagaagtcaac |
39362631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University