View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_high_28 (Length: 326)
Name: NF12039_high_28
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 11307631 - 11307941
Alignment:
| Q |
1 |
ttgaaataaatatcttaagagtaacaaacacgcctatccatcacgacgtgtatagttcacaaccactatttactactttcatttatttctcgtaatcttc |
100 |
Q |
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| T |
11307631 |
ttgaaataaatatcttaagagtaacaaacacgcctatccatcacgacgtgtatagttcacaaccactatttactactttcatttatttctcgtaatcttc |
11307730 |
T |
|
| Q |
101 |
caccaaaacaagtcgaattctcactatataaacacatagcttgctgatactataactatcaaagttaaaccaaaacattcacaaactaagtactaaattc |
200 |
Q |
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| T |
11307731 |
caccaaaacaagtcgaattctcactatataaacacatagcttgctgatactataactatcaaagttaaaccaaaacattcacaaactaagtactaaattc |
11307830 |
T |
|
| Q |
201 |
tcaaactcttatattcatcgnnnnnnnggttaagaaatgacaggaaattgtgagaattatgcaatcggaatcgacttaggaacaacccgttcttgtgttg |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11307831 |
tcaaactcttatattcatcgaaaaaaaggttaagaaatgacaggaaattgtgagaattatgcaatcggaatcgacttaggaacaacccgttcttgtgttg |
11307930 |
T |
|
| Q |
301 |
ctgtatatatg |
311 |
Q |
| |
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||||||||||| |
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| T |
11307931 |
ctgtatatatg |
11307941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 11159829 - 11159756
Alignment:
| Q |
233 |
agaaatgacaggaaattgtgagaattatgcaatcggaatcgacttaggaacaacccgttcttgtgttgctgtat |
306 |
Q |
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||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||| |
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| T |
11159829 |
agaaatgacagtaaaaagtgagaaagttgcaataggaatcgacctaggaacaacctattcttgtgttgctgtat |
11159756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 11198381 - 11198308
Alignment:
| Q |
233 |
agaaatgacaggaaattgtgagaattatgcaatcggaatcgacttaggaacaacccgttcttgtgttgctgtat |
306 |
Q |
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||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||| |
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| T |
11198381 |
agaaatgacagtaaaaggtgagaaagttgcaataggaatcgacctaggaacaacctattcttgtgttgctgtat |
11198308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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