View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_high_33 (Length: 294)
Name: NF12039_high_33
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 1139539 - 1139723
Alignment:
| Q |
26 |
actcttctaaactaaaccaaaggtgttaaagttgtcgataaagttatatatcattgcatcaatgcaaggttaggtttaattatttgtgatatgaataaaa |
125 |
Q |
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| T |
1139539 |
actcttctaaactaaaccaaaggtgttaaaattgtcgataaatttatatattattgcatcaatgcaaggttaggtttaattatttgtgatatgaataaaa |
1139638 |
T |
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| Q |
126 |
tgatcttaaaattcaaaagagaatcccaaatgacaatgaagattcataccagttttgaaattgttaatcgtatataattgaagaa |
210 |
Q |
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| T |
1139639 |
taatcttaaaattcaaaagaaaatctcaaatgacaatgaagattcatatcaattttgaaattgttaatcgtatataattgaagaa |
1139723 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 1140251 - 1140315
Alignment:
| Q |
212 |
atttaatggacggtttcttttcgcctatggttaaaggtgaaaggccgacgtttcaaagacaactg |
276 |
Q |
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| T |
1140251 |
atttaatggacggtttcttttcgcctatggttaaaggtgaaaggtcgacgtttcaaagacaactg |
1140315 |
T |
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