View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_high_41 (Length: 239)
Name: NF12039_high_41
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38094795 - 38094568
Alignment:
| Q |
1 |
tgagtggactacatttttatctaccagttactctctgtttgcagctggtttatatcactgtctcccccattccgtgatcaattgcttttacaaatcctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38094795 |
tgagtggactacatttttatctaccagttactctctgtttgcagctggtttatatcactgtctcccccattccgtgatcaattgcttttacaaatcctat |
38094696 |
T |
|
| Q |
101 |
agcaagagaaaa-----aaggattggagggaccattgctcccgactagagtatactctcatatggaactcactcacgtgtccacttaaacctaggacatt |
195 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38094695 |
agcaagagaaaaaagctaaggattggagggaccattgctcccgactagagtatactctcgtatggaactcactcacgtgtccacttaaacctaggacatt |
38094596 |
T |
|
| Q |
196 |
attgtcaaacctataataaatagagata |
223 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38094595 |
attgtcaaacctataataaatagagata |
38094568 |
T |
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