View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_high_42 (Length: 239)
Name: NF12039_high_42
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_high_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 21195168 - 21194936
Alignment:
| Q |
7 |
atgaagaggataattaactttcaaacaaatttagtgtattaaatatttgaatgcattttctcacaattttcaatttcannnnnnnnataaataaaagtgc |
106 |
Q |
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| T |
21195168 |
atgaagaggataattaactttcaaacaaatttagtttattaaatatttgaatgcattttctcacaattttcagtttcattttttttttaaataaaagtgc |
21195069 |
T |
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| Q |
107 |
atttaactattatctaattggtttggaaattacagtactatgccaaattttgcatgtctaattctagatcacaaacatagttcaaatgaatagtaaaggc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195068 |
atttaactattatctaattggtttggaaattacagtactatgccaaattttgcatgtctaattctagatcacaaacatagttcaaatgaatagtaaaggc |
21194969 |
T |
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| Q |
207 |
aacaattaatcaatgtgagatcattataatcct |
239 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
21194968 |
aacaattaatcaatgtgagatcattataatcct |
21194936 |
T |
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