View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12039_high_7 (Length: 597)

Name: NF12039_high_7
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12039_high_7
NF12039_high_7
[»] chr6 (23 HSPs)
chr6 (19-161)||(26651213-26651355)
chr6 (19-161)||(26757181-26757323)
chr6 (283-495)||(27421097-27421309)
chr6 (400-581)||(31289890-31290071)
chr6 (282-483)||(26652098-26652298)
chr6 (282-483)||(26758066-26758266)
chr6 (171-283)||(26651937-26652049)
chr6 (171-283)||(26757905-26758017)
chr6 (164-264)||(26632565-26632665)
chr6 (164-264)||(26738541-26738641)
chr6 (19-161)||(26631562-26631706)
chr6 (19-161)||(26737537-26737681)
chr6 (167-283)||(27421358-27421474)
chr6 (19-161)||(26966207-26966350)
chr6 (182-277)||(31289644-31289739)
chr6 (360-506)||(26632715-26632861)
chr6 (360-506)||(26738691-26738837)
chr6 (31-117)||(31289431-31289518)
chr6 (283-373)||(31289794-31289885)
chr6 (35-87)||(26853738-26853790)
chr6 (36-87)||(27586682-27586733)
chr6 (38-96)||(27702303-27702362)
chr6 (19-96)||(26890168-26890246)
[»] scaffold0003 (2 HSPs)
scaffold0003 (283-495)||(66054-66266)
scaffold0003 (167-283)||(65889-66005)
[»] chr4 (1 HSPs)
chr4 (37-102)||(5083208-5083274)
[»] chr8 (1 HSPs)
chr8 (18-96)||(29269963-29270042)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26651213 - 26651355
Alignment:
Q  19 gtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttgagctcagttatactggtttcagaattttgag 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  26651213 gtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgagcttagttatactggttgcagatttttgag 26651312  T
Q  119 aatttcaatctcagtacacaagttggaatcctaatagaaagag 161  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||    
T  26651313 aatttcaatttcagtacacaaattggaatccttatagaaagag 26651355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26757181 - 26757323
Alignment:
Q  19 gtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttgagctcagttatactggtttcagaattttgag 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||    
T  26757181 gtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctttgagcttagttatactggttgcagatttttgag 26757280  T
Q  119 aatttcaatctcagtacacaagttggaatcctaatagaaagag 161  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||    
T  26757281 aatttcaatttcagtacacaaattggaatccttatagaaagag 26757323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 283 - 495
Target Start/End: Complemental strand, 27421309 - 27421097
Alignment:
Q  283 tcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttga 382  Q
    |||||||||| | ||| ||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  27421309 tcacatcagtgctaaaaaaagttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttga 27421210  T
Q  383 cgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtatc 482  Q
    | || | | |||||||||| |||| || ||||||||| |   |    |||||||| || |||  |||||||||||| |||| ||||||||||||| ||||    
T  27421209 cacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatc 27421110  T
Q  483 cttggtttctgca 495  Q
    | |||||||||||    
T  27421109 cctggtttctgca 27421097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 400 - 581
Target Start/End: Original strand, 31289890 - 31290071
Alignment:
Q  400 tcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtatccttggtttctgcagcct 499  Q
    ||||||| || |||||||| |||| | || ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |  |||||||| | |    
T  31289890 tcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgt 31289989  T
Q  500 aatctttaatcccggaggcgatgaatgttgatttcgttctctggcggagatttccagcaattgctgtcacactttttctcct 581  Q
    ||||||| ||||||  || ||||| || ||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  31289990 aatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgctgtcacactttttctcct 31290071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 483
Target Start/End: Original strand, 26652098 - 26652298
Alignment:
Q  282 ttcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttg 381  Q
    ||||||||| | ||||| ||||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  26652098 ttcacatcattgccaaaaaaaat-gtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttg 26652196  T
Q  382 acgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtat 481  Q
    | | | | | ||||||||| ||||   | ||||||||||||| | |  ||| ||||||| |||  |||||||||||  |||| ||||||||||||| |||    
T  26652197 atgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatat 26652296  T
Q  482 cc 483  Q
    ||    
T  26652297 cc 26652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 483
Target Start/End: Original strand, 26758066 - 26758266
Alignment:
Q  282 ttcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttg 381  Q
    ||||||||| | ||||| ||||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  26758066 ttcacatcattgccaaaaaaaat-gtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttg 26758164  T
Q  382 acgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtat 481  Q
    | | | | | ||||||||| ||||   | ||||||||||||| | |  ||| ||||||| |||  |||||||||||  |||| ||||||||||||| |||    
T  26758165 atgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatat 26758264  T
Q  482 cc 483  Q
    ||    
T  26758265 cc 26758266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 171 - 283
Target Start/End: Original strand, 26651937 - 26652049
Alignment:
Q  171 gtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatg 270  Q
    |||| ||||||||||||| || |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  26651937 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26652036  T
Q  271 aaatttgagtttt 283  Q
    | ||||| |||||    
T  26652037 atatttgcgtttt 26652049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 171 - 283
Target Start/End: Original strand, 26757905 - 26758017
Alignment:
Q  171 gtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatg 270  Q
    |||| ||||||||||||| || |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  26757905 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26758004  T
Q  271 aaatttgagtttt 283  Q
    | ||||| |||||    
T  26758005 atatttgcgtttt 26758017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 26632565 - 26632665
Alignment:
Q  164 cataatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaag 263  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |||||    
T  26632565 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26632664  T
Q  264 a 264  Q
    |    
T  26632665 a 26632665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 26738541 - 26738641
Alignment:
Q  164 cataatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaag 263  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |||||    
T  26738541 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26738640  T
Q  264 a 264  Q
    |    
T  26738641 a 26738641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26631562 - 26631706
Alignment:
Q  19 gtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaattttg 116  Q
    |||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |||||    
T  26631562 gtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagttttg 26631661  T
Q  117 agaatttcaatctcagtacacaagttggaatcctaatagaaagag 161  Q
    ||||||||||| | ||||||||| |||||||||  ||||||||||    
T  26631662 agaatttcaatattagtacacaaattggaatccgtatagaaagag 26631706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26737537 - 26737681
Alignment:
Q  19 gtctagagatttctcgcaccacagaatctgttgg-ttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaattttg 116  Q
    |||||||| || |||||| ||||||||| |||   |||||  |||| ||||||||||||||||||||| | |||||||||||||||||| |||| |||||    
T  26737537 gtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgcttcgcagctcagttatactggttgcagagttttg 26737636  T
Q  117 agaatttcaatctcagtacacaagttggaatcctaatagaaagag 161  Q
    ||||||||||| | ||||||||| |||||||||  ||||||||||    
T  26737637 agaatttcaatattagtacacaaattggaatccgtatagaaagag 26737681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 27421474 - 27421358
Alignment:
Q  167 aatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatc 266  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||| |||||| |||||| || ||||||||| | ||||||||||| |||||| |    
T  27421474 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 27421375  T
Q  267 tatgaaatttgagtttt 283  Q
    | ||||||||| |||||    
T  27421374 tgtgaaatttgcgtttt 27421358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26966207 - 26966350
Alignment:
Q  19 gtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaattttga 117  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||| || ||||||||  ||||  | ||||||| |||||||| |||| |||  |    
T  26966207 gtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgctacacttttcatctcagttttactggttgcagagtttgaa 26966306  T
Q  118 gaatttcaatctcagtacacaagttggaatcctaatagaaagag 161  Q
    |||||||||||| |||||| || |||||||||| ||||||||||    
T  26966307 gaatttcaatcttagtacaaaaattggaatccttatagaaagag 26966350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 31289644 - 31289739
Alignment:
Q  182 acagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatgaaatttg 277  Q
    ||||||| |||||||||||   ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||| |||||    
T  31289644 acagctgcagcaacctgtactggatgttgataaatggttgccagagagtgcaacatattctcggtgaaaggttgttatcaagatctgtgatatttg 31289739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 360 - 506
Target Start/End: Original strand, 26632715 - 26632861
Alignment:
Q  360 gattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaa 459  Q
    |||| ||||||||||||||||||| |  | | | |||| ||  |||| || ||||| |||| || | | |||||||| |||||||||||||||||||||     
T  26632715 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26632814  T
Q  460 acccaaccttcagcttcagtatccttggtttctgcagcctaatcttt 506  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||||    
T  26632815 acccgaccttcagcttcagtatccctggtatctgcatcctaatcttt 26632861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 360 - 506
Target Start/End: Original strand, 26738691 - 26738837
Alignment:
Q  360 gattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaa 459  Q
    |||| ||||||||||||||||||| |  | | | |||| ||  |||| || ||||| |||| || | | |||||||| |||||||||||||||||||||     
T  26738691 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26738790  T
Q  460 acccaaccttcagcttcagtatccttggtttctgcagcctaatcttt 506  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||||    
T  26738791 acccgaccttcagcttcagtatccctggtatctgcatcctaatcttt 26738837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 31289431 - 31289518
Alignment:
Q  31 ctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactggtttcagaattttga 117  Q
    |||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||| || ||| ||||||||||| |||| ||||||    
T  31289431 ctcgcagcacagaatccgttggttgttcgaaagggcagtgagtaatgctatgctttgcagatcaattatactggttacagagttttga 31289518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 31289794 - 31289885
Alignment:
Q  283 tcacatcagtcccaaacaaa-attgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggac 373  Q
    |||||||||| ||||| ||| | ||||||| ||  |||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  31289794 tcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattccctatggac 31289885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 26853738 - 26853790
Alignment:
Q  35 caccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 87  Q
    ||||||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  26853738 caccacaaaatctgttggctgttcgaaagggcagtgagtaatgatatgctttg 26853790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 27586733 - 27586682
Alignment:
Q  36 accacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg 87  Q
    |||||||||||||| | ||||||||||  ||||||||||||| |||||||||    
T  27586733 accacagaatctgtggcttgtttgaaatggcagtgagtaatgatatgctttg 27586682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 27702362 - 27702303
Alignment:
Q  38 cacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 96  Q
    ||||||||| |||||||||| |||||  |||||||||||| ||||||||| |||||||||    
T  27702362 cacagaatccgttggttgttcgaaaggacagtgagtaatgatatgctttgcagctcagtt 27702303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 26890168 - 26890246
Alignment:
Q  19 gtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 96  Q
    |||||||| ||  ||||||||||||||| || |||||||  |||| ||||||||||| | ||||||||| |||||||||    
T  26890168 gtctagaggttgttcgcaccacagaatccgtcggttgttctaaagggcagtgagtaacggtatgctttgcagctcagtt 26890246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 283 - 495
Target Start/End: Original strand, 66054 - 66266
Alignment:
Q  283 tcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttga 382  Q
    |||||||||| | ||| ||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  66054 tcacatcagtgctaaaaaaagttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttga 66153  T
Q  383 cgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtatc 482  Q
    | || | | |||||||||| |||| || ||||||||| |   |    |||||||| || |||  |||||||||||| |||| ||||||||||||| ||||    
T  66154 cacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatc 66253  T
Q  483 cttggtttctgca 495  Q
    | |||||||||||    
T  66254 cctggtttctgca 66266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 65889 - 66005
Alignment:
Q  167 aatggtggaaaatttacagctgaagcaacctgtatcagatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatc 266  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||| |||||| |||||| || ||||||||| | ||||||||||| |||||| |    
T  65889 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 65988  T
Q  267 tatgaaatttgagtttt 283  Q
    | ||||||||| |||||    
T  65989 tgtgaaatttgcgtttt 66005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 5083208 - 5083274
Alignment:
Q  37 ccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagttatactg 102  Q
    |||||||||| || | ||||||||||| ||||||||||||| ||||||||| ||||||||| |||||    
T  5083208 ccacagaatccgtggattgtttgaaagggcagtgagtaatgatatgctttgcagctcagttgtactg 5083274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 29270042 - 29269963
Alignment:
Q  18 agtctagagatttctcgcaccacagaatctgttggttgtttgaaagtgcagtgagtaatgctatgctttg-agctcagtt 96  Q
    ||||||||| || ||| || |||| |||| ||| |||||| ||||| ||||||||||||| ||||||||| |||||||||    
T  29270042 agtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagtaatgatatgctttgcagctcagtt 29269963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University