View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12039_high_9 (Length: 580)

Name: NF12039_high_9
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12039_high_9
NF12039_high_9
[»] chr6 (15 HSPs)
chr6 (192-540)||(15579435-15579782)
chr6 (192-533)||(33679748-33680088)
chr6 (271-540)||(28895034-28895304)
chr6 (273-540)||(35027687-35027949)
chr6 (267-493)||(12746109-12746336)
chr6 (192-377)||(11409839-11410017)
chr6 (262-387)||(25328179-25328304)
chr6 (262-387)||(26160714-26160839)
chr6 (192-390)||(26160959-26161150)
chr6 (353-482)||(7560778-7560908)
chr6 (446-533)||(11296607-11296693)
chr6 (405-460)||(2330066-2330121)
chr6 (379-460)||(17695999-17696081)
chr6 (192-245)||(12746045-12746097)
chr6 (239-279)||(28895228-28895268)
[»] chr5 (16 HSPs)
chr5 (193-540)||(2500561-2500907)
chr5 (192-540)||(35433027-35433368)
chr5 (267-540)||(26337274-26337547)
chr5 (267-534)||(9690052-9690321)
chr5 (267-540)||(33920434-33920706)
chr5 (270-540)||(33321477-33321747)
chr5 (192-390)||(3194301-3194492)
chr5 (192-390)||(34653574-34653765)
chr5 (23-97)||(15016335-15016409)
chr5 (379-460)||(4732446-4732527)
chr5 (192-232)||(33321774-33321814)
chr5 (46-188)||(17881461-17881603)
chr5 (192-245)||(26337209-26337262)
chr5 (191-232)||(33920370-33920411)
chr5 (192-229)||(40183023-40183060)
chr5 (239-279)||(26337314-26337354)
[»] chr7 (17 HSPs)
chr7 (192-533)||(38430611-38430951)
chr7 (192-532)||(44018354-44018684)
chr7 (267-540)||(26152443-26152716)
chr7 (267-533)||(6963577-6963845)
chr7 (267-540)||(43548505-43548758)
chr7 (423-540)||(3541720-3541838)
chr7 (192-367)||(3541842-3542010)
chr7 (466-540)||(12803817-12803891)
chr7 (192-330)||(16546813-16546944)
chr7 (192-330)||(16618718-16618849)
chr7 (324-390)||(23467913-23467979)
chr7 (426-481)||(20100106-20100162)
chr7 (192-245)||(23467984-23468036)
chr7 (191-232)||(26152379-26152420)
chr7 (192-245)||(43548441-43548493)
chr7 (192-232)||(6963514-6963554)
chr7 (239-279)||(26152483-26152523)
[»] chr8 (8 HSPs)
chr8 (192-537)||(39660517-39660862)
chr8 (192-534)||(5827250-5827585)
chr8 (267-540)||(13331381-13331654)
chr8 (262-537)||(9466437-9466691)
chr8 (192-390)||(14187130-14187321)
chr8 (379-481)||(27864157-27864259)
chr8 (239-279)||(9466482-9466522)
chr8 (405-481)||(22653700-22653776)
[»] chr4 (10 HSPs)
chr4 (192-540)||(19928126-19928469)
chr4 (192-540)||(13978356-13978699)
chr4 (192-540)||(26704044-26704386)
chr4 (267-540)||(56089868-56090142)
chr4 (284-533)||(15850481-15850731)
chr4 (18-188)||(54159366-54159536)
chr4 (18-178)||(53867778-53867938)
chr4 (192-245)||(15850417-15850469)
chr4 (192-245)||(56090154-56090206)
chr4 (239-279)||(56090062-56090102)
[»] scaffold0083 (2 HSPs)
scaffold0083 (192-540)||(28545-28886)
scaffold0083 (267-540)||(52412-52683)
[»] scaffold0401 (1 HSPs)
scaffold0401 (192-526)||(3482-3809)
[»] chr3 (6 HSPs)
chr3 (192-540)||(4249608-4249950)
chr3 (192-532)||(28326669-28326999)
chr3 (192-532)||(28329994-28330324)
chr3 (192-387)||(18882378-18882566)
chr3 (192-390)||(36037762-36037953)
chr3 (254-490)||(18550950-18551190)
[»] chr1 (13 HSPs)
chr1 (192-540)||(50197469-50197811)
chr1 (192-540)||(6195062-6195405)
chr1 (256-532)||(23441846-23442124)
chr1 (267-540)||(18391684-18391958)
chr1 (192-532)||(33897551-33897882)
chr1 (267-540)||(34553242-34553516)
chr1 (192-377)||(49718924-49719102)
chr1 (192-366)||(49715445-49715612)
chr1 (379-460)||(28917785-28917865)
chr1 (192-232)||(18391621-18391661)
chr1 (384-435)||(13795591-13795642)
chr1 (239-280)||(23442032-23442073)
chr1 (192-245)||(34553528-34553580)
[»] scaffold0637 (5 HSPs)
scaffold0637 (192-540)||(396-744)
scaffold0637 (365-534)||(839-1008)
scaffold0637 (365-534)||(1109-1278)
scaffold0637 (368-540)||(1382-1554)
scaffold0637 (365-534)||(1649-1818)
[»] chr2 (13 HSPs)
chr2 (192-540)||(9748161-9748492)
chr2 (192-533)||(38316608-38316944)
chr2 (192-532)||(40678335-40678665)
chr2 (267-540)||(30994280-30994554)
chr2 (192-390)||(38325475-38325666)
chr2 (192-390)||(38327093-38327284)
chr2 (192-377)||(29434860-29435038)
chr2 (379-460)||(2648970-2649051)
chr2 (324-386)||(4577072-4577134)
chr2 (379-460)||(18011361-18011442)
chr2 (192-245)||(4577015-4577067)
chr2 (192-245)||(30994566-30994618)
chr2 (239-279)||(30994474-30994514)
[»] scaffold0273 (2 HSPs)
scaffold0273 (267-540)||(20239-20513)
scaffold0273 (238-279)||(20433-20474)
[»] scaffold0911 (1 HSPs)
scaffold0911 (192-540)||(3787-4129)
[»] scaffold0382 (1 HSPs)
scaffold0382 (192-390)||(16374-16565)
[»] scaffold0043 (1 HSPs)
scaffold0043 (446-540)||(13062-13156)
[»] scaffold0214 (5 HSPs)
scaffold0214 (324-390)||(12829-12895)
scaffold0214 (324-390)||(26845-26911)
scaffold0214 (324-390)||(16903-16969)
scaffold0214 (324-390)||(19287-19353)
scaffold0214 (192-245)||(16846-16898)
[»] scaffold0002 (1 HSPs)
scaffold0002 (259-300)||(469218-469259)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-135; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 192 - 540
Target Start/End: Complemental strand, 15579782 - 15579435
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  15579782 aagattcataaaagataagttttgcacaaattggagaaaaa-tgcaagaatttacctgaagatgctggaaaaatcatgtcacgatggacctgaatcgtgg 15579684  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    ||  ||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||    
T  15579683 cacatttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatggttgagtaaatttgctgccatgtag 15579584  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||||||||| ||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  15579583 gattaatgagcaaatcgtaccacgatggtctcgtaacgtggcacgatggtgggctttctgaaaccctaattttgtgtctataaaatccagaagcgaccat 15579484  T
Q  492 aagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  15579483 aagcttagggtgcgattttggagacctaaatagagcatagacggcacca 15579435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 192 - 533
Target Start/End: Complemental strand, 33680088 - 33679748
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaa--aaattgtgccacgatggacctgaatcgt 289  Q
    |||||||| | |||||||||| ||||||||| |||||| || ||||||||||||||||||||||   ||   |||| ||||||| ||||||||||||| |    
T  33680088 aagattcacataagagaagttttgcacaaattggagaagaa-tgcaagaatttacctgaagatg---gacctaaatcgtgccacaatggacctgaatcat 33679993  T
Q  290 ggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgt 389  Q
    |||| |||||||| ||| ||||||||| || || || |||||||| | ||||||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  33679992 ggcacgtttgaagcgtggaatttacctgaaaatactagaaaaatcatcgcacgatggatgtgtaatgtgccatgatggttgagtaaatttgctgccacgt 33679893  T
Q  390 aggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgac 488  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||| | |||||||||||| |||| || ||    
T  33679892 aggattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgatggtgggcttttctgaaactctaattctttgtctataaaagtcagatgcaac 33679793  T
Q  489 cagaagcttggggtgcgattttggagaccaaaacagagcatagac 533  Q
    ||||||||| |  ||||||||| |||||| |||||||||||||||    
T  33679792 cagaagcttagtatgcgattttagagacctaaacagagcatagac 33679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 271 - 540
Target Start/End: Complemental strand, 28895304 - 28895034
Alignment:
Q  271 cacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttg 370  Q
    |||||||||||||||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||     
T  28895304 cacgatggacctgaatcgtggcacatttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatggttt 28895205  T
Q  371 agtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtc 469  Q
    ||||||| || ||||||||  |||||||||   |||||||||||||||  | ||||||||||||| ||||||||| ||||||||||||||||| | ||||    
T  28895204 agtaaatttgttgccacgtcagattaatgaaggaatcgtgccacgatggacgcgaaacgtggcacgatggtgggcttttctgaaaccctaattctttgtc 28895105  T
Q  470 tataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||| |||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  28895104 tataaaagtcagatgcgaccaaaagcttagggtgcgattttggagacctaaacatagcatagacggcacca 28895034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 273 - 540
Target Start/End: Complemental strand, 35027949 - 35027687
Alignment:
Q  273 cgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgag 372  Q
    |||||||| |||||||||||| |||||||| ||  ||||||| | ||||| ||||||||||||||||||||| ||| ||||||||||||||||| || ||    
T  35027949 cgatggacttgaatcgtggcacgtttgaagcgtagaatttacttgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatgatttag 35027850  T
Q  373 taaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtcta 471  Q
    ||||| |||||||||||  |||||||||   |||| ||||||||||  |  |||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  35027849 taaatttgctgccacgtcagattaatgaaggaatcttgccacgatggacgtgaaacgtggcacgatggtgggcttttctgaaaccctaattctttgtcta 35027750  T
Q  472 taaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||| |||| ||||||||||||      |||||||||||||||| ||||||||||||||||||||||    
T  35027749 taaaagtcagatgcgaccagaagc------tgcgattttggagacctaaacagagcatagacggcacca 35027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 267 - 493
Target Start/End: Original strand, 12746109 - 12746336
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||| ||||| ||||||||  |||| ||||| | ||||||||||||||||| |||  |||| ||| |||||||||||||||||    
T  12746109 gtgccacgatggacctgaatcatggcacgtttgaagcatgaattttacatgaagatgctggaaaaatcatggtgcgatggatatgtaacgtgccacgatg 12746208  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgg-gctttctgaaaccctaattttg 465  Q
    ||| ||||||| |||||||||||   ||||||||   ||| || ||||||||  | ||||| ||||||| |||||||   ||||||||||||||||| |     
T  12746209 gtttagtaaatttgctgccacgttaaattaatgaaggaattgtaccacgatggacgcgaaatgtggcacgatggtggaattttctgaaaccctaattctt 12746308  T
Q  466 tgtctataaaagccagaagcgaccagaa 493  Q
    |||||||||||| |||| ||||||||||    
T  12746309 tgtctataaaagtcagatgcgaccagaa 12746336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 377
Target Start/End: Original strand, 11409839 - 11410017
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||       ||||| ||||||||||||||||||||||| | ||||    
T  11409839 aagattcataaaagagaagttctgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaattgtgccacgatggacctgagttgtgg 11409931  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaat 377  Q
    || |||||||| ||| ||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||| |||| |||||    
T  11409932 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtgacacgatggatgtgcaacgtgccacgatgattgaataaat 11410017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 262 - 387
Target Start/End: Original strand, 25328179 - 25328304
Alignment:
Q  262 aaattgtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgcca 361  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||| ||||||| | ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  25328179 aaatcgtgccacgatggacctgaatcgtggcacgtttgaagcgtggaatttacttgaagatgctgaaaaaatcatggcacgatagatatgtaacgtgcca 25328278  T
Q  362 cgatggttgagtaaatatgctgccac 387  Q
    ||||| |||| ||||||| |||||||    
T  25328279 cgatgattgaataaatatactgccac 25328304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 262 - 387
Target Start/End: Original strand, 26160714 - 26160839
Alignment:
Q  262 aaattgtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgcca 361  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||| ||||||| | ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  26160714 aaatcgtgccacgatggacctgaatcgtggcacgtttgaagcgtggaatttacttgaagatgctgaaaaaatcatggcacgatagatatgtaacgtgcca 26160813  T
Q  362 cgatggttgagtaaatatgctgccac 387  Q
    ||||| |||| ||||||| |||||||    
T  26160814 cgatgattgaataaatatactgccac 26160839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 192 - 390
Target Start/End: Complemental strand, 26161150 - 26160959
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||| ||||||| ||||||||| ||| ||| |||||||||||||| ||       ||||| |||| ||||||  |||||||||||||||||    
T  26161150 aagattcataaaaaagaagttttgcacaaattgga-aaagaatgcaagaatttagcta------ctggataaatcgtgccataatggacctgaatcgtgg 26161058  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||| ||||||| | ||||||||| ||||||| ||||||||| ||| ||||||||||||| ||| |||| ||||| | ||||||||||    
T  26161057 cacgtttgaagcgtggaatttacttgaagatgctgaaaaaatcatggcacgatggatatgtaacgtgccacaatgattgaataaatttactgccacgta 26160959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 482
Target Start/End: Complemental strand, 7560908 - 7560778
Alignment:
Q  353 aacgtgccacgatggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggcttt-ctg 451  Q
    |||||||||||||| ||   | ||| |||||||||||  |||||||||| |||||||||||| | | |||| |||| |||||| ||| || ||||| |||    
T  7560908 aacgtgccacgatgattcgttgaatttgctgccacgttagattaatgaggaaatcgtgccacaaaggtctcaaaacttggcacgatgatgagcttttctg 7560809  T
Q  452 aaaccctaattttgtgtctataaaagccaga 482  Q
    ||||||||||| | |||||||||||||||||    
T  7560808 aaaccctaattctttgtctataaaagccaga 7560778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 446 - 533
Target Start/End: Complemental strand, 11296693 - 11296607
Alignment:
Q  446 tttctgaaaccctaattttgtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagac 533  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| | ||   ||| ||||||||||||| ||| |||||||||||    
T  11296693 tttctgaaaccctaattttgtgtctataaaagtcagaagcaaccaga-gattaaagtgtgattttggagacctaaatagagcatagac 11296607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 2330066 - 2330121
Alignment:
Q  405 atcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaa 460  Q
    |||||||||||||  || || |||||||||| ||| ||||||||||||||||||||    
T  2330066 atcgtgccacgattgtcccgtaacgtggcacgatgatgggctttctgaaaccctaa 2330121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 460
Target Start/End: Original strand, 17695999 - 17696081
Alignment:
Q  379 tgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaa 460  Q
    ||||||||||||||||||||||    |||||||||||||    ||| |||||||||| ||| ||||| |||||||||||||||    
T  17695999 tgctgccacgtaggattaatgatgtcatcgtgccacgattggatcgtaacgtggcacgatgatgggcttttctgaaaccctaa 17696081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 12746045 - 12746097
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||  |||||||||    
T  12746045 aagattcataaaagagaagttttgcacaaattggag-aaaaatcaaagaattta 12746097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 28895268 - 28895228
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  28895268 gaatttacctgaagatactggaaaaatcgtggcacgatgga 28895228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 193 - 540
Target Start/End: Complemental strand, 2500907 - 2500561
Alignment:
Q  193 agattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaa-gatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    |||| ||||||||||||||| | ||||||| ||||||  | |||||||||||| ||  | |||||||||||||| ||| |||||||||| ||||||||||    
T  2500907 agatccataaaagagaagtttt-cacaaattggagaatga-tgcaagaatttagctacatgatgctggaaaaatcgtgtcacgatggacttgaatcgtgg 2500810  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    |  |||||||| ||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  2500809 cgcgtttgaagcgtgaaatttacatgaagatgccggaaaaatcgtggcacgatggatgtgtaacgtgccacgatggttgagtaaatttgctgccacgtag 2500710  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||| ||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2500709 gattgatgagcaaatcatgccacgatggtctcgaaacgtggcacgatggtgggctttctgaaaccctaattttgtgtctataaaagcgagaagcgaccag 2500610  T
Q  492 aagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  2500609 aagcttggggtgcgattttggagacctaaacagagcatagacgacacca 2500561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 192 - 540
Target Start/End: Complemental strand, 35433368 - 35433027
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| |||| |||| |||||| || |||||||||||| ||       | ||| |||| |||||||||||||||||||| ||||    
T  35433368 aagattcataaaagagaagttttgcataaattggagaagaa-tgcaagaatttagcta------cgggagaaatcgtgccacgatggacctgaattgtgg 35433276  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||||||  || |||||||||||||||| ||| |||||||||||||||||||| ||||||||||| | ||||||| |||    
T  35433275 cacgtttgaagcgtgtaatttacctaaaattgttggaaaaatcgtggcatgat-gatgtgtaacgtgccacgatagttgagtaaattttctgccacttag 35433177  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    ||| |||||| |||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||   ||||||||||||||||| |||| ||    
T  35433176 gataaatgagtaaatcgtgccacgatggtctcgaaacgtggcacgatggtggacttttctgaaaccctaattcgttgtctataaaagccagatgcgatca 35433077  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||  ||| |||||||||||||| ||||||||||||||||||||||    
T  35433076 gaagcttatggttcgattttggagacctaaacagagcatagacggcacca 35433027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 26337274 - 26337547
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    |||||||||||||||||||| |||||| |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  26337274 gtgccacgatggacctgaattgtggcacgtttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatg 26337373  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| |||||||||||  |||||||||   |||||||||||||||  | ||||||||||||| ||| ||||| |||| |||| ||||||| |     
T  26337374 gtttagtaaatttgctgccacgtcagattaatgaaggaatcgtgccacgatggacgcgaaacgtggcacgatgatgggcttttcagaaatcctaattctt 26337473  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||| |||| |||||||||||||| ||| | ||||||||||||| ||| |||||||||||| |||||    
T  26337474 tgtctataaaagtcagatgcgaccagaagcttaggg-gagattttggagacctaaatagagcatagacgacacca 26337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 267 - 534
Target Start/End: Original strand, 9690052 - 9690321
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  9690052 gtgccacgatgaacctgaatcgtggcacgtttgaagcgtgaaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatg 9690151  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| |||| ||||||  |||||||||   |||||||| ||||||  |  |||||||||||| ||||||||| ||||| ||||||||||| |     
T  9690152 gtttagtaaatttgctaccacgtcagattaatgaaggaatcgtgctacgatggacgtgaaacgtggcacgatggtgggcttttctcaaaccctaattctt 9690251  T
Q  466 tgtctataaaagccagaagcgaccagaagc-ttggggtgcgattttggagaccaaaacagagcatagacg 534  Q
    |||||||||||| || | |||| ||||||| || | ||||||||||||||||| ||||| ||||||||||    
T  9690252 tgtctataaaagtcatatgcgatcagaagctttagtgtgcgattttggagacctaaacatagcatagacg 9690321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 33920434 - 33920706
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||| ||||||||||||| |||| || ||| |||||||||||||||||    
T  33920434 gtgccacgatggacctgaatcgtggcacgtttgaagcgtggaatttacctgaagatactggaaaaatcgttgcacaatggatatgtaacgtgccacgatg 33920533  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| | || ||||||  |||||||||   |||||||||| ||||  | ||||||| ||||| ||||||||| ||||| |||| |||||| |     
T  33920534 gtttagtaaatttactaccacgtcagattaatgaaggaatcgtgccatgatggacgcgaaacgcggcacgatggtgggcttttctaaaactctaattctt 33920633  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||||||||| | |||||||||||||| ||  || |||||||||||| |||||||||||||||| |||||    
T  33920634 tgtctataaaagccaaatgcgaccagaagcttagg--gcaattttggagacctaaacagagcatagacgtcacca 33920706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 270 - 540
Target Start/End: Complemental strand, 33321747 - 33321477
Alignment:
Q  270 ccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggtt 369  Q
    |||||||||||||||||||||| | | |||||| ||| ||||| ||| ||||| |||||||| | |||||||||| ||| ||||||||||||||||||||    
T  33321747 ccacgatggacctgaatcgtggtacgcttgaagcgtggaattttcctgaagatactggaaaatt-gtggcacgatggatatgtaacgtgccacgatggtt 33321649  T
Q  370 gagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggcttt-ctgaaaccctaattttgtgt 468  Q
     ||||||| || || |||||  |||||||||   || ||||||||||||  | ||||||||||||| |||||||||||| |||||||||||||| | |||    
T  33321648 tagtaaatttgttgtcacgtcagattaatgaaggaaacgtgccacgatggacgcgaaacgtggcacgatggtgggcttttctgaaaccctaattctttgt 33321549  T
Q  469 ctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||| |||| | ||||| |||||| ||||||||||||||||||| ||||| ||||||||| ||||||    
T  33321548 ctataaaagtcagatgtgaccaaaagcttagggtgcgattttggagacctaaacatagcatagacagcacca 33321477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 3194301 - 3194492
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  3194301 aagattcataaaagagaagttctgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaatcgtgccacgatggacctgaatcgtgg 3194393  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||  ||| ||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| | || |||||||    
T  3194394 cacatttaaagcgtgaaatttatctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactaccacgta 3194492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 192 - 390
Target Start/End: Complemental strand, 34653765 - 34653574
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||| ||       ||||| |||| |||||||||||||||||||| || |    
T  34653765 aagattcataaaagagaagttctgcacaaattgaagaagaa-tgcaagaatttagcta------ctggagaaatcgtgccacgatggacctgaattgtag 34653673  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||| ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||| | ||||||||||    
T  34653672 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcaccatggatgtgtaacgtgccacgatgattgaataaatttactgccacgta 34653574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 15016409 - 15016335
Alignment:
Q  23 tttagtgtgaaaaatctcatttacattggttacactagtgatccatcatctgctatccgcgtgactaggaggcga 97  Q
    ||||||||| | ||||| || |||||||||||  || |||||||||||||||||||||| |||||||||||||||    
T  15016409 tttagtgtggagaatctgatgtacattggttatcctggtgatccatcatctgctatccgtgtgactaggaggcga 15016335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 460
Target Start/End: Complemental strand, 4732527 - 4732446
Alignment:
Q  379 tgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaa 460  Q
    ||||||||| ||||||||||||    |||||||||||||    ||| |||||||||| ||||||||||||||||||||||||    
T  4732527 tgctgccacttaggattaatgaagccatcgtgccacgattggatcgtaacgtggcacgatggtgggctttctgaaaccctaa 4732446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 33321814 - 33321774
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaa 232  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  33321814 aagattcataaaagagaagttttgcacaaattggagaaaaa 33321774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 17881603 - 17881461
Alignment:
Q  46 cattggttacactagtgatccatcatctgctatccgcgtgactaggaggcgaagtttagatcgcaaattgcaacactcagaacgagatgtaattcagtgt 145  Q
    |||||||||  || |||||||||||||||| ||||| |||||||||| |||||   | |||||| ||   ||||| |||||| || ||||| | |||||     
T  17881603 cattggttatcctggtgatccatcatctgcgatccgtgtgactaggatgcgaaacatggatcgccaaaaacaacattcagaaagaaatgtattgcagtgc 17881504  T
Q  146 tttgtttttgggcccaggggtgctggaaaatcttcattattga 188  Q
    ||  |||||||||| |||   || ||||||||| |||||||||    
T  17881503 ttcatttttgggcctaggaaggccggaaaatctgcattattga 17881461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 26337209 - 26337262
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||| ||||| ||||||||| ||| |||||||  |||||||||    
T  26337209 aagattcataaaagataagttttgcacaaattggaaaaaaaatcaaagaattta 26337262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 33920370 - 33920411
Alignment:
Q  191 aaagattcataaaagagaagttatgcacaaatcggagaaaaa 232  Q
    |||||||||||||||||||||| ||||||||| | |||||||    
T  33920370 aaagattcataaaagagaagttttgcacaaattgaagaaaaa 33920411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 40183060 - 40183023
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaa 229  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  40183060 aagattcataaaagagaagttttgcacaaattggagaa 40183023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 26337314 - 26337354
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  26337314 gaatttacctgaagatactggaaaaatcgtggcacgatgga 26337354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 192 - 533
Target Start/End: Original strand, 38430611 - 38430951
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaag-atgctggaaaaattgtgccacgatggacctgaatcgtg 290  Q
    ||||||||||||||||||||| ||||||||| ||||||  | |||||||||||| ||  || |||||| |||||| ||| || |||||||||||||| ||    
T  38430611 aagattcataaaagagaagttttgcacaaattggagaatga-tgcaagaatttagctacaggatgctgaaaaaatcgtgtcatgatggacctgaatcatg 38430709  T
Q  291 gcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||| | || |||||||    
T  38430710 gcacgtttgaagagtggaatttacctgaagatgctggaaaaatcgtggcacgacggatgtgtaacgtgccacggcggttgagtaaattttctaccacgta 38430809  T
Q  391 ggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38430810 ggattaatgagaaaatcgtgccacgatggtctcgaaacgtggcacgatggtgggctttctgaaaccctaattttgtgtctattaaagccagaagcgacca 38430909  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagac 533  Q
    | || || ||||||||||||||||||| ||||| |||||||||    
T  38430910 g-agattagggtgcgattttggagacctaaacatagcatagac 38430951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 192 - 532
Target Start/End: Complemental strand, 44018684 - 44018354
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  44018684 aagattcataaaagagaagtt-tgcacaaattgaagaagaa-tgcaagaatttac----------tggagaaatcgtgccacgatggacctgaatcgtgg 44018597  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||    
T  44018596 cacgtttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggacgtataacgtgccacgatggttgagtaaatttgctgccacgtag 44018497  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| ||||||||||||||||| | ||||||||||||| | | |||| ||    
T  44018496 gattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgattttgggcttttctgaaaccctaattctttgtctataaaagcaaaatgcgatca 44018397  T
Q  491 gaa-gcttggggtgcgattttggagaccaaaacagagcataga 532  Q
    ||| |   || | |||||||||||||| |||||||||||||||    
T  44018396 gaaggagaggcgggcgattttggagacaaaaacagagcataga 44018354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 26152443 - 26152716
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  26152443 gtgccacgatggacctgaatcgtggcacgtttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatg 26152542  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| |||||||| ||  |||||||||   |||||||||||||||  | ||||||||||||| ||||||||| |||||| |||||||||| |     
T  26152543 gtttagtaaatttgctgccaagtcagattaatgaaggaatcgtgccacgatggacgcgaaacgtggcacgatggtgggcttttctggaaccctaattctt 26152642  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||| |||| |||||||||||||| |||||  |||| ||||||| ||||| |||||||||| |||||    
T  26152643 tgtctataaaagtcagatgcgaccagaagcttagggtg-aatttcggagacctaaacaaagcatagacgacacca 26152716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 267 - 533
Target Start/End: Original strand, 6963577 - 6963845
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||||  |||||||| ||||||||||| ||| ||||||| |||||||||    
T  6963577 gtgccacgatggacctgaatcgtggcacgtttgaagcgtggaatttacctgaagatattggaaaaagcgtggcacgatggatatgtaacgcgccacgatg 6963676  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccct-aatttt 464  Q
    ||| ||||||| ||||| |||||  |||||||||   |||| ||||||||||  |  |||||||||||| ||||||||| ||||||||||| | |||| |    
T  6963677 gtttagtaaatttgctgtcacgtcagattaatgaaggaatcatgccacgatggacgtgaaacgtggcacgatggtgggcttttctgaaaccgtaaattct 6963776  T
Q  465 gtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagac 533  Q
     | |||||||||  || | |||| ||||||||| | ||||||||||||||||| |||||||||||||||    
T  6963777 ttttctataaaattcatatgcgatcagaagctttgtgtgcgattttggagacctaaacagagcatagac 6963845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 43548505 - 43548758
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  43548505 gtgccacgatggacctgaatcgtggcacgtttgaagtgtggaatttacctaaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatg 43548604  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| ||||| ||||| ||||||||||   ||||||||||||                     ||||||||| ||||| ||||||||||| |     
T  43548605 gtttagtaaatttgctgtcacgtcggattaatgaaggaatcgtgccacg---------------------atggtgggcttttcttaaaccctaattctt 43548683  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||| || | |||| |||||| || ||||||||||||||||||| ||||| ||||||||||||||||    
T  43548684 tgtctataaaagtcaaatgcgatcagaagtttagggtgcgattttggagacctaaacatagcatagacggcacca 43548758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 423 - 540
Target Start/End: Complemental strand, 3541838 - 3541720
Alignment:
Q  423 cgaaacgtggcacaatggtgggcttt-ctgaaaccctaattttgtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaa 521  Q
    ||||||||||||  |||||||||||| || ||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||    
T  3541838 cgaaacgtggcatgatggtgggcttttctaaaaccctaattctttgtctataaaagccagatgcgaccagaagcttagggtgcgatttcggagacctaaa 3541739  T
Q  522 cagagcatagacggcacca 540  Q
     ||||||||||||||||||    
T  3541738 tagagcatagacggcacca 3541720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 3542010 - 3541842
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||| ||       ||| | |||| |||||||||||||||| ||| ||||    
T  3542010 aagattcataaaagagaagttttgcacaaattgtagaagaa-tgcaagaatttagcta------ctgaagaaatcgtgccacgatggacctaaattgtgg 3541918  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatgg 367  Q
    || |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  3541917 cacgtttgaagcgtggaatttaccttaagatactggaaaaatcgtggcacgatggatatgtaatgtgccacgatgg 3541842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 466 - 540
Target Start/End: Complemental strand, 12803891 - 12803817
Alignment:
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||||||||||| |||| ||||||||| || |||||||||||||||| ||||||||||||||| ||||||    
T  12803891 tgtctataaaagccagatgcgatcagaagcttaggttgcgattttggagacctaaacagagcatagacagcacca 12803817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 16546813 - 16546944
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||| || |||||||||||||      || | || || |||| |||| ||||||||||||||||||||    
T  16546813 aagattcataaaagagaagttttgcacaaattggag-aagaatgcaagaattt------agctactagagaaatcgtgctacgatggacctgaatcgtgg 16546905  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaa 330  Q
    || | ||||||  || ||||||||| |||||| ||||||    
T  16546906 cacggttgaagcatggaatttacctgaagatgttggaaa 16546944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 330
Target Start/End: Complemental strand, 16618849 - 16618718
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||| || |||||||||||||      || | || || |||| |||| ||||||||||||||||||||    
T  16618849 aagattcataaaagagaagttttgcacaaattggag-aagaatgcaagaattt------agctactagagaaatcgtgctacgatggacctgaatcgtgg 16618757  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaa 330  Q
    || | ||||||  || ||||||||| |||||| ||||||    
T  16618756 cacggttgaagcatggaatttacctgaagatgttggaaa 16618718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 23467979 - 23467913
Alignment:
Q  324 ctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||    
T  23467979 ctggagaaatcgtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactgccacgta 23467913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 20100106 - 20100162
Alignment:
Q  426 aacgtggcacaatggtgggctttctgaaaccctaattttgtgtctata-aaagccag 481  Q
    |||||||||| ||||||||||||||||||||||||| || | |||||| ||||||||    
T  20100106 aacgtggcacgatggtgggctttctgaaaccctaatattctttctatataaagccag 20100162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 23468036 - 23467984
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| | || || ||||||||||||||    
T  23468036 aagattcataaaagagaagttctgcacaaattgtag-aagaatgcaagaattta 23467984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 26152379 - 26152420
Alignment:
Q  191 aaagattcataaaagagaagttatgcacaaatcggagaaaaa 232  Q
    ||||||||||||||| |||||| ||||||||| |||||||||    
T  26152379 aaagattcataaaagtgaagttttgcacaaattggagaaaaa 26152420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 43548441 - 43548493
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||  |||||||||    
T  43548441 aagattcataaaagagaagttttgcacaaattggag-aaaaatcaaagaattta 43548493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 6963514 - 6963554
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaa 232  Q
    ||||||||||||||| ||||| ||||||||| |||||||||    
T  6963514 aagattcataaaagataagttttgcacaaattggagaaaaa 6963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 26152483 - 26152523
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  26152483 gaatttacctgaagatactggaaaaatcgtggcacgatgga 26152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 192 - 537
Target Start/End: Complemental strand, 39660862 - 39660517
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaag-atgctggaaaaattgtgccacgatggacctgaatcgtg 290  Q
    |||||||||| |||||||||| |||||||||   ||||  | |||||||||||| ||  || ||||||||||||| ||| ||||||||||||||| ||||    
T  39660862 aagattcatataagagaagttttgcacaaattttagaatga-tgcaagaatttagctacaggatgctggaaaaatcgtgtcacgatggacctgaaccgtg 39660764  T
Q  291 gcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||| |||||||| ||| ||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||    
T  39660763 gcacgtttgaagcgtggaatttacctgaagatgctggaaaaattgtggcacgatggatgtgtaacgtgccacgatggttgagtaaatttgatgccacgta 39660664  T
Q  391 ggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||    
T  39660663 ggattaatgagaaaatcgtgccacgatggtctcgaaacgtgacacaatggtggactttctgaaaccctaattttgtgtcaattaaagccagaagcgatca 39660564  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagacggca 537  Q
    ||   | || ||||||||||||||||| |||||||||| ||||||||    
T  39660563 gagattaggtgtgcgattttggagacctaaacagagcaaagacggca 39660517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 192 - 534
Target Start/End: Original strand, 5827250 - 5827585
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || | |||||||||| ||       ||||| |||| |||| |||||||||||||||| |||    
T  5827250 aagattcataaaagagaagttttgcacaaattggagaagaatt-caagaatttagcta------ctggagaaatcgtgctacgatggacctgaatcatgg 5827342  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    |  |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||    
T  5827343 cgcgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccatgatggttgagtaaatttgctgcctcgtag 5827442  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||||||| | |||||||||||| ||| |||||||||||||||| |||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||    
T  5827443 gattaatgggcaaatcgtgccacaatggtctcgaaacgtggcacgatggtgggttttttgaaaccccaattttgtgtatataaaagccagaagcgaccag 5827542  T
Q  492 aagcttggggtgcgattttggagaccaaaacagagcatagacg 534  Q
    |||||| | | ||||||||| ||||| ||| ||||||||||||    
T  5827543 aagctttgcgggcgattttgaagacctaaatagagcatagacg 5827585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 13331381 - 13331654
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    |||||||||||||||| |||||||||| |||||||| ||| ||||||||| ||||||||| ||| ||  |||||||||  ||||||||||| ||||||||    
T  13331381 gtgccacgatggacctaaatcgtggcacgtttgaagcgtggaatttacctgaagatgctgaaaatat--tggcacgatgaatgtgtaacgttccacgatg 13331478  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgt 466  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||    
T  13331479 gttgagtaaatttgctgccacgtaggattaatgagaaaatcgtgacacgatggtctcgaaacgtggcacgatggtgagctttctgaaaccctaattttgt 13331578  T
Q  467 gtctataaaagccagaagcgaccagaagctt---ggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||||| ||||||| ||||| || ||   || ||||||||||||||||| ||||| |||||||||| |||||    
T  13331579 gtctataaaagtcagaagcaaccag-agattaaaggtgtgcgattttggagacctaaacaaagcatagacgacacca 13331654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 262 - 537
Target Start/End: Original strand, 9466437 - 9466691
Alignment:
Q  262 aaattgtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgcca 361  Q
    |||| ||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9466437 aaatcgtgccgcgatggacctgaatcgtggcacgtttgaagcgtggaatttacctaaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgcca 9466536  T
Q  362 cgatggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaat 461  Q
    |||||||| ||||||| ||||||||| |||||||| |||| |||||||||||||                     |||||||| ||| ||||||||||||    
T  9466537 cgatggttaagtaaatttgctgccacataggattactgagcaaatcgtgccacg---------------------atggtgggatttttgaaaccctaat 9466615  T
Q  462 tttgtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggca 537  Q
    |||||||||||||||| ||||| ||||||||   |  ||||||||||||||||||| |||||||||||||||||||    
T  9466616 tttgtgtctataaaagtcagaaacgaccagagattatgggtgcgattttggagacctaaacagagcatagacggca 9466691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 14187130 - 14187321
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||| ||||||||||| ||||||||| | | ||  |||||||||||||| ||       ||||| ||||  ||||||||||||||||||||||||    
T  14187130 aagattcatgaaagagaagttctgcacaaattgaa-aatgaatgcaagaatttagcta------ctggagaaatcatgccacgatggacctgaatcgtgg 14187222  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||    
T  14187223 cacgtttgaagcgtggaatttaactgaagatgctggaaaaatggtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactgccacgta 14187321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 481
Target Start/End: Complemental strand, 27864259 - 27864157
Alignment:
Q  379 tgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagc 478  Q
    ||||||||||||||||||||||    |||||||||||||    ||| |||||||||| ||||||||||||||||||||||||  || | |||||| ||||    
T  27864259 tgctgccacgtaggattaatgaaggcatcgtgccacgattggatcgtaacgtggcacgatggtgggctttctgaaaccctaaaattctttctatataagc 27864160  T
Q  479 cag 481  Q
    |||    
T  27864159 cag 27864157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 9466482 - 9466522
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    |||||||||| |||||||||||||||| ||| |||||||||    
T  9466482 gaatttacctaaagatgctggaaaaatcgtggcacgatgga 9466522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 22653700 - 22653776
Alignment:
Q  405 atcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccag 481  Q
    |||||||||||||    ||| |||||||||| |||||||||||||| |||||||||  || | ||||| ||||||||    
T  22653700 atcgtgccacgattggatcgtaacgtggcacgatggtgggctttctaaaaccctaaaattctttctattaaagccag 22653776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 19928126 - 19928469
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| || |||||| |||||| || |||||||||||| ||    ||  |||| |||| ||||||||||||||||||||| |||    
T  19928126 aagattcataaaagagaagttttgtacaaattggagaagaa-tgcaagaatttagct----at--tggagaaatcgtgccacgatggacctgaatcatgg 19928218  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  19928219 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggacgtgtaacgtgccacgatggttgagtaaatttgctgccacgtag 19928318  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| | |||||||||||||| ||| ||||| ||||||||||||||||| | ||||||||||||||||| |||| ||    
T  19928319 gattaatgagtaaatcgtgccacgatggtatcgaaacgtggcacgatgatgggcttttctgaaaccctaattctttgtctataaaagccagatgcgatca 19928418  T
Q  491 gaagctt-ggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  19928419 gaagcttaagggggcgattttggagaccaaaacagagcatagacggcacca 19928469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 13978356 - 13978699
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| | ||||||| |||||| || | |||||||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  13978356 aagattcataaaagagaagtttttcacaaattggagaagaa-tacaagaatttagcta------ctggagaaatcgtgccacgatggacctgaatcgtgg 13978448  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || ||||||||  || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  13978449 cacgtttgaagcatggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatggttgagtaaatttgctgccacgtag 13978548  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||| ||||||||||| |  ||||||||||||  ||||||||| ||||||||||||||||| | ||||||||||||||||| | || ||    
T  13978549 gattaatgagcaaattgtgccacgatggttacgaaacgtggcatgatggtgggcttttctgaaaccctaattctttgtctataaaagccagatgtgatca 13978648  T
Q  491 gaag-cttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||  |||||| ||||||||||||||| ||| ||||||||||||||||||    
T  13978649 gaagttttggggagcgattttggagacctaaatagagcatagacggcacca 13978699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 192 - 540
Target Start/End: Complemental strand, 26704386 - 26704044
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||| ||||| || |||||| |||||| || |||||||||||| ||       ||||| |||| ||||||| |||||||||||||||||    
T  26704386 aagattcataaaagaaaagttttgtacaaattggagaagaa-tgcaagaatttagcta------ctggagaaatcgtgccacaatggacctgaatcgtgg 26704294  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||    
T  26704293 cacgtttgaagcgtggaatttatctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatggatgagtaaatttgctgccacgtag 26704194  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtg-ggctttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| ||||||||||| |||| |||||||||||||||| |||||| |  ||||||||||| ||||||| |||||||| |||||||| |||| ||    
T  26704193 gattaatgagcaaatcgtgccatgatggtctcgaaacgtggcacgatggtgagattttctgaaaccttaattttttgtctatagaagccagatgcgatca 26704094  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
     |||||| | |||| ||||| |||||| |||||||||||||||| |||||    
T  26704093 aaagctttgtgtgcaattttagagacctaaacagagcatagacgacacca 26704044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 267 - 540
Target Start/End: Complemental strand, 56090142 - 56089868
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||||||||| ||||||||  || ||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||| |||    
T  56090142 gtgccacgatggacctgaatcgtggcacgtttgaagcatggaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacaatg 56090043  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| |||||||||||  |||||||||   |||||||||||||||  | ||||||||||||| ||||||||| ||||||||||||||||| |     
T  56090042 gtttagtaaatttgctgccacgtcagattaatgaaggaatcgtgccacgatggacgcgaaacgtggcacgatggtgggcttttctgaaaccctaattctt 56089943  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    | |||||||||| |||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  56089942 tatctataaaagtcagatgcgaccagaagcttagggtgcgattttagagacctaaacagagcatagacggcacca 56089868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 284 - 533
Target Start/End: Original strand, 15850481 - 15850731
Alignment:
Q  284 aatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctg 383  Q
    |||||||||| |||||||| ||| ||||||| | || |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||    
T  15850481 aatcgtggcacgtttgaagcgtggaatttacttgaatatgctgaaaaaatcgtggcacgatggatgtgtaacgtgtcacgatggttgagtaaatttgctg 15850580  T
Q  384 ccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaa 483  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  15850581 ccacgtaggattaatgagcaaatcgtgccacgatggtctcgaaacatggcaagatggt-ggctttctgaaaccctaattttgtgtctataaaagtcagaa 15850679  T
Q  484 gcgaccagaagctt---ggggtgcgattttggagaccaaaacagagcatagac 533  Q
    || ||||| || ||   |||||| |||||||||||||  || |||||||||||    
T  15850680 gcaaccag-agattaagggggtgtgattttggagacctcaatagagcatagac 15850731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 54159536 - 54159366
Alignment:
Q  18 caacttttagtgtgaaaaatctcatttacattggttacactagtgatccatcatctgctatccgcgtgactaggaggcgaagtttagatcgcaaattgca 117  Q
    |||||||||||||||| |||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54159536 caacttttagtgtgaagaatctgctttacattggttacactggcgatccatcatctgctatccgcgtgactaggaggcgaagttttgatcgcaaattgca 54159437  T
Q  118 acactcagaacgagatgtaattcagtgttttgtttttgggcccaggggtgctggaaaatcttcattattga 188  Q
     ||||| |||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||| ||||    
T  54159436 gcactcggaacgagacgtcattcagtgctttgtttttgggcccaggagtgctggaaaatcttcattgttga 54159366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 53867778 - 53867938
Alignment:
Q  18 caacttttagtgtgaaaaatctcatttacattggttacactagtgatccatcatctgctatccgcgtgactaggaggcgaagtttagatcgcaaattgca 117  Q
    ||||||||||||| || ||||| ||||| ||||||| | || | ||||||||| ||||||| || |||| |||||| |||||||||||||||||| ||||    
T  53867778 caacttttagtgtaaagaatctgatttatattggtttccctggcgatccatcaactgctattcgtgtgattaggagccgaagtttagatcgcaaaatgca 53867877  T
Q  118 acactcagaacgagatgtaattcagtgttttgtttttgggcccaggggtgctggaaaatct 178  Q
    |||||| |||||| ||||| | ||||| |||||||||||||| ||||| ||||||||||||    
T  53867878 acactcggaacgaaatgtattccagtgctttgtttttgggcctaggggggctggaaaatct 53867938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 15850417 - 15850469
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||    
T  15850417 aagattcataaaagagaagttttgcacaaattggag-aagaatgcaagaattta 15850469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 56090206 - 56090154
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||  |||||||||    
T  56090206 aagattcataaaagagaagttttgcacaaattggag-aaaaatcaaagaattta 56090154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 56090102 - 56090062
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  56090102 gaatttacctgaagatactggaaaaatcgtggcacgatgga 56090062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 28545 - 28886
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||| ||||| |||||||||  ||||| || |||||||||||| ||       ||||| |||| |||||||||||| |||||||| |||    
T  28545 aagattcataaaagataagttttgcacaaattcgagaagaa-tgcaagaatttaacta------ctggagaaatcgtgccacgatgggcctgaatcatgg 28637  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    ||  ||||||| ||| ||||||||| || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||    
T  28638 cacatttgaagcgtggaatttacctgaatatgctggaaaaatcgtggcacaatggatgtgtaacgtgccacgatggttgagtaaatttgctgccacgtag 28737  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  28738 gattaatgagaaaatcgtaccacgatggtctcgaaacgtggcacgatggtgggctttctgaaaccctaattttgtgtttttaaaatccagaagcgaccag 28837  T
Q  492 aagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||||||||||||||| |||| ||  |||||||||||| |||||    
T  28838 aagcttggggtgcgattttggggacctaattagagcatagacgacacca 28886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 52412 - 52683
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    |||||||||||||||||||||||| ||  ||||||| ||| |||| |||| ||||| ||||||||||  ||||||||| ||| |||||||||||||||||    
T  52412 gtgccacgatggacctgaatcgtg-cacatttgaagcgtggaattcaccttaagatactggaaaaatgatggcacgatggatatgtaacgtgccacgatg 52510  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgt 466  Q
    ||| ||||||| |||||||||||  |||||||||   |||||||||||||||  | | ||| ||||||| |||||||||||||||||| ||||||| | |    
T  52511 gtttagtaaatttgctgccacgtcagattaatgaaggaatcgtgccacgatggacgcaaaatgtggcacgatggtgggctttctgaaa-cctaattcttt 52609  T
Q  467 gtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
     |||||||||| || | ||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  52610 ttctataaaagtcatatgcgaccaaaagcttagggtgcgattctggagacctaaacagagcatagacggcacca 52683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 192 - 526
Target Start/End: Original strand, 3482 - 3809
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || || ||||| ||| ||    ||  |||| |||| |||||||||||||||||||||||||    
T  3482 aagattcataaaagagaagttttgcacaaattggagaagaa-tgaaagaagttagct----at--tggagaaatcgtgccacgatggacctgaatcgtgg 3574  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| ||||||||    
T  3575 catgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatgaatgtgtaacgtgccacgatggttgagtaaatttgctaccacgtag 3674  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  3675 gattaatgagaaaattgtgccacaatggtcttgaaacgtggcacgatggtgggctttctgaaaccctaattttgtgtctattaaagccagaagcggccaa 3774  T
Q  492 aagcttggggtgcgattttggagaccaaaacagag 526  Q
    ||||||| || ||||||||||||||| ||| ||||    
T  3775 aagcttgcggggcgattttggagacctaaatagag 3809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 4249608 - 4249950
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||       ||||| |||| ||  |||||||||||||||||||||    
T  4249608 aagattcataaaagagaagttttgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaatcgtcgcacgatggacctgaatcgtgg 4249700  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  4249701 cacgtttgaagcgtgaaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatggtggagtaaatttgctgccacgtag 4249800  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||| |||| ||    
T  4249801 gattaatgagcaaatcgttccacgatggtctcgaaacgtggcacgatggtgggcttttctgaaaccctaattctttgtctataaaagccagatgcgatca 4249900  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||| ||| |   ||||||||||| ||||| |||||||||| |||||    
T  4249901 gaagcttagggggattttttggagacctaaacatagcatagacgacacca 4249950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 192 - 532
Target Start/End: Original strand, 28326669 - 28326999
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  28326669 aagattcataaaagagaagtt-tgcacaaattgaagaagaa-tgcaagaatttac----------tggagaaatcgtgccacgatggacctgaatcgtgg 28326756  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||    
T  28326757 cacgtttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggacgtataacgtgccacgatggttgagtaaatttgctgccacgtag 28326856  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| ||||||||||||||||| | ||||||||||||| | | |||| |     
T  28326857 gattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgattttgggcttttctgaaaccctaattctttgtctataaaagcaaaatgcgatcg 28326956  T
Q  491 gaa-gcttggggtgcgattttggagaccaaaacagagcataga 532  Q
    ||| |   |||| |||||||||||||| |||||||||||||||    
T  28326957 gaaggagaggggggcgattttggagacaaaaacagagcataga 28326999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 192 - 532
Target Start/End: Original strand, 28329994 - 28330324
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  28329994 aagattcataaaagagaagtt-tgcacaaattgaagaagaa-tgcaagaatttac----------tggagaaatcgtgccacgatggacctgaatcgtgg 28330081  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||    
T  28330082 cacgtttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggacgtataacgtgccacgatggttgagtaaatttgctgccacgtag 28330181  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| ||||||||||||||||| | ||||||||||||| | | |||| |     
T  28330182 gattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgattttgggcttttctgaaaccctaattctttgtctataaaagcaaaatgcgatcg 28330281  T
Q  491 gaa-gcttggggtgcgattttggagaccaaaacagagcataga 532  Q
    ||| |   |||| |||||||||||||| |||||||||||||||    
T  28330282 gaaggagaggggggcgattttggagacaaaaacagagcataga 28330324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 192 - 387
Target Start/End: Original strand, 18882378 - 18882566
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| | ||||||| | |||| || |||||||||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  18882378 aagattcataaaagagaagttctacacaaattgaagaagaa-tgcaagaatttagcta------ctggagaaatcgtgccacgatggacctgaatcgtgg 18882470  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccac 387  Q
    || |||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| | |||||||    
T  18882471 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactgccac 18882566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 192 - 390
Target Start/End: Complemental strand, 36037953 - 36037762
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||| |||| || || |||||| |||||| || |||||||||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  36037953 aagattcataaaaaagaaattttgtacaaattggagaagaa-tgcaagaatttagcta------ctggataaatcgtgccacgatggacctgaatcgtgg 36037861  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||||||||||||| |||||  || ||||||||||||||||| ||| ||||||||||||||||| |||| ||||| | ||||||||||    
T  36037860 cacgtttgaagcgtgaaatttacctgaagatattgaaaaaatcgtggcacgatggatatgtaacgtgccacgatgattgaataaatttactgccacgta 36037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 254 - 490
Target Start/End: Original strand, 18550950 - 18551190
Alignment:
Q  254 tgctggaaaaattgtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgta 353  Q
    ||||||| ||||  || ||| |||||||||||| || ||| ||| |||| ||| |||| |||| | | |||| |||||||| ||||| ||| ||| ||||    
T  18550950 tgctggagaaatcatgacactatggacctgaattgtcgcacgttcgaagcgtggaattaacctgatgttgctagaaaaatcatggcatgatggatatgta 18551049  T
Q  354 acgtgccacgatggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacg----atgctctcgaaacgtggcacaatggtgggctttc 449  Q
    ||||||||||||||||| || ||| |||||||||||| |||||||||| |||| ||||||||    ||| ||  |||| ||||||| ||||||||||||     
T  18551050 acgtgccacgatggttgggtgaatttgctgccacgtatgattaatgagcaaattgtgccacgatatatggtcgtgaaatgtggcacgatggtgggctttt 18551149  T
Q  450 tgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||||  || | ||||||||||||| |||||||||    
T  18551150 tgaaaccctaaaattctttctataaaagccataagcgacca 18551190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 192 - 540
Target Start/End: Complemental strand, 50197811 - 50197469
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  50197811 aagattcataaaagagaagttttgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaatcgtgccacgatggacctgaatcgtgg 50197719  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  50197718 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatggttgagtaaatttgctaccacgtag 50197619  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||||||| |||| |||| |||| ||    
T  50197618 gattaatgagcaaatcgtgccacgatggtctcgaaatgtggcacgatggtgggcttttttgaaaccctaattctttgtctattaaagtcagatgcgatca 50197519  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||   | ||||||||||||||| |||||||||||||||| |||||    
T  50197518 gaagcttaaagagcgattttggagacctaaacagagcatagacgacacca 50197469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 6195062 - 6195405
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    |||||||  |||||||||||| ||||||||| ||||||||| | |||||||||| ||       ||||| |||| ||||||| ||| |||||||||||||    
T  6195062 aagattctcaaaagagaagttttgcacaaattggagaaaaa-tacaagaatttagcta------ctggagaaatcgtgccacaatgaacctgaatcgtgg 6195154  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||||| ||||||| |||||| |||||||||||||| ||||| |||| ||||||||||||||  ||||||||||| |||||||||||||    
T  6195155 cacgtttgaagcgtgaagtttacctgaagatgttggaaaaatcgtggtacgatggatgcgtaacgtgccacgacagttgagtaaatttgctgccacgtag 6195254  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| || ||    
T  6195255 gattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgatggtgggctttctaaaaccctaattttgtgtctataaaagtcagaagcaactag 6195354  T
Q  492 aagctt---ggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
     || ||   || ||||||||||||||||| ||||||||||||||||||||||    
T  6195355 -agattaaaggtgtgcgattttggagacctaaacagagcatagacggcacca 6195405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 256 - 532
Target Start/End: Complemental strand, 23442124 - 23441846
Alignment:
Q  256 ctggaaaaattgtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaac 355  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| || || ||||    
T  23442124 ctggagaaatcgtgccacgatggacctgaatcgtggcacgtttgaagcgtggaatttacctgaagattctggaaaaatcgtggcacgatggacgtataac 23442025  T
Q  356 gtgccacgatggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaa 454  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| |||||||||    
T  23442024 gtgccacgatggttgagtaaatttgctgccacgtaggattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgattttgggcttttctgaaa 23441925  T
Q  455 ccctaattttgtgtctataaaagccagaagcgaccagaa-gcttggggtgcgattttggagaccaaaacagagcataga 532  Q
    |||||||| | ||||||||||||| | | |||| ||||| |   |||| |||||||||||||| |||||||||||||||    
T  23441924 ccctaattctttgtctataaaagcaaaatgcgatcagaaggagaggggggcgattttggagacaaaaacagagcataga 23441846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 267 - 540
Target Start/End: Original strand, 18391684 - 18391958
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||| ||||||||| |||||||||||| ||||    
T  18391684 gtgccacgatggacttgaatcgtggcacgtttgaagcgtgaaatttacctaaagatactggaaaaattgtggaacgatagatatgtaacgtgccatgatg 18391783  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| |||||||||||  |||||||||   ||| |||||||||||  | ||||||||||||| ||||||||| ||||| ||||||||||| |     
T  18391784 gtttagtaaatttgctgccacgtcagattaatgaaggaattgtgccacgatggacacgaaacgtggcacgatggtgggcttttctaaaaccctaattctt 18391883  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||||||||||||| |||||    
T  18391884 tgtctataaaagccagatgcgatcagaagctttgtgtgcgattttggagacctaaacagagcatagacgacacca 18391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 192 - 532
Target Start/End: Original strand, 33897551 - 33897882
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  33897551 aagattcataaaagagaagtt-tgcacaaattgaagaagaa-tgcaagaatttac----------tggagaaatcgtgccacgatggacctgaatcgtgg 33897638  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||    
T  33897639 cacgtttgaagcgtggaatttacctgaagatactggaaaaatcgtggcacgatggacgtataacgtgccacgatggttgagtaaatttgctgccacgtag 33897738  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| ||||||||||||||||| | ||||||||||||| | | |||| ||    
T  33897739 gattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgattttgggcttttctgaaaccctaattctttgtctataaaagcaaaaggcgatca 33897838  T
Q  491 gaagcttgg--ggtgcgattttggagaccaaaacagagcataga 532  Q
    ||||    |  || |||||||||||||| |||||||||||||||    
T  33897839 gaaggagagatggggcgattttggagacaaaaacagagcataga 33897882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 267 - 540
Target Start/End: Complemental strand, 34553516 - 34553242
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    ||||||||||||||||||||||||||| ||||||||  || ||||||||| ||||| ||| |||||||||||||| || ||| |||||||||||||||||    
T  34553516 gtgccacgatggacctgaatcgtggcacgtttgaagcttggaatttacctgaagatactgaaaaaatcgtggcacaatggatatgtaacgtgccacgatg 34553417  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| |||||||||||  |||||||||   ||| |||||||||||  | ||||||||||||| ||||||||| ||||||||||||||||| |     
T  34553416 gtttagtaaatttgctgccacgtcagattaatgaaggaattgtgccacgatggacgcgaaacgtggcacgatggtgggcttttctgaaaccctaattctt 34553317  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||  |||| |||||||||||||| | | |   ||||||||||| |||||||||||||||| |||||    
T  34553316 tgtctataaaattcagatgcgaccagaagcttagagaggatttttggagacctaaacagagcatagacgacacca 34553242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 192 - 377
Target Start/End: Original strand, 49718924 - 49719102
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||       ||||| ||||||||||||||||||||||| | ||||    
T  49718924 aagattcataaaagagaagttctgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaattgtgccacgatggacctgagttgtgg 49719016  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaat 377  Q
    ||  ||||||| ||| ||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||| |||| |||||    
T  49719017 cacatttgaagcgtggaatttacctgaagatgctggaaaaatcgtgacacgatggatgtgcaacgtgccacgatgattgaataaat 49719102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 49715445 - 49715612
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| |||| |||| |||||| || |||||||||||| ||       ||||| ||||||||||||||||||||||| | ||||    
T  49715445 aagattcataaaagagaagttctgcataaattggagaagaa-tgcaagaatttagcta------ctggagaaattgtgccacgatggacctgagttgtgg 49715537  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    || |||||||| ||||||||||||| |||||||||||||||| ||| |||||| |||||| ||||||||||||||    
T  49715538 cacgtttgaagcgtgaaatttacctgaagatgctggaaaaattgtgacacgatggatgtgcaacgtgccacgatg 49715612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 460
Target Start/End: Original strand, 28917785 - 28917865
Alignment:
Q  379 tgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaa 460  Q
    ||||||||||||||||||||||    |||||||||||||    ||| |||||||||| ||||||||| ||||||||||||||    
T  28917785 tgctgccacgtaggattaatgaagtcatcgtgccacgattggatcgtaacgtggcacgatggtgggc-ttctgaaaccctaa 28917865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 18391621 - 18391661
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaa 232  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  18391621 aagattcataaaagagaagttttgcacaaattggagaaaaa 18391661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 13795642 - 13795591
Alignment:
Q  384 ccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcac 435  Q
    ||||||||||||||||||  |||||||||||||||  | |||||||||||||    
T  13795642 ccacgtaggattaatgaggtaatcgtgccacgatgaccccgaaacgtggcac 13795591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 23442073 - 23442032
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatggac 280  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  23442073 gaatttacctgaagattctggaaaaatcgtggcacgatggac 23442032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 34553580 - 34553528
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||  |||||||||    
T  34553580 aagattcataaaagagaagttttgcacaaattggag-aaaaatcaaagaattta 34553528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 178; Significance: 1e-95; HSPs: 5)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 396 - 744
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaag-atgctggaaaaattgtgccacgatggacctgaatcgtg 290  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||   | ||| || ||||||  | |||||||||||||||||||||    
T  396 aagattcataaaagagaagttttgcacaaattggagaataa-tgcaagaatttagctactggatgttgaaaaaatcttaccacgatggacctgaatcgtg 494  T
Q  291 gcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
     || |||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| | ||||||||||    
T  495 acacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtttaacgtgccatgatggttgagtaaatttactgccacgta 594  T
Q  391 ggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    ||||||||||| || ||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  ||||    
T  595 ggattaatgaggaactcgtgccacgatggtctcaaaacgtggcacgatggtgggctttatgaaaccctaattttgtgtctataaaagccagaagaaacca 694  T
Q  491 gaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||   | || ||||||||||||||||| ||| |||||||| ||| |||||    
T  695 gagattaggtgtgcgattttggagacctaaagagagcataaacgacacca 744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 365 - 534
Target Start/End: Original strand, 839 - 1008
Alignment:
Q  365 tggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaatttt 464  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||    
T  839 tggttgagtaaatttactgccacgtaggattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgatggtgggttttatgaaaccctaatttt 938  T
Q  465 gtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacg 534  Q
    |||||||||||||||||||| |||||||   | || ||||||||||||||||| ||||||||||| ||||    
T  939 gtgtctataaaagccagaagggaccagagattaggtgtgcgattttggagacctaaacagagcatggacg 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 365 - 534
Target Start/End: Original strand, 1109 - 1278
Alignment:
Q  365 tggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaatttt 464  Q
    ||||||||||||| | ||||||||||||||||||||| || ||||||||||||| |||| ||||||||||| |||||||||||| ||||||| |||||||    
T  1109 tggttgagtaaatttactgccacgtaggattaatgagcaactcgtgccacgatggtctcaaaacgtggcacgatggtgggctttatgaaaccttaatttt 1208  T
Q  465 gtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacg 534  Q
    ||||||||||||||||||||||||||||   | || ||||||||||||||||| ||| ||||||||||||    
T  1209 gtgtctataaaagccagaagcgaccagagattaggtgtgcgattttggagacctaaatagagcatagacg 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 368 - 540
Target Start/End: Original strand, 1382 - 1554
Alignment:
Q  368 ttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtg 467  Q
    |||||||||| | ||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||||    
T  1382 ttgagtaaatttactgccacataggattaatgagcaaatcgtgccacgatggtctcaaaacgtggcacgatggtgggttttatgaaaccctaattttgtg 1481  T
Q  468 tctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||||||||||||||||   | || ||||||||| | ||||| |||| ||||||||||| |||||    
T  1482 tctataaaagccagaagcgaccagagattaggtgtgcgatttcgaagacctaaaccgagcatagacgacacca 1554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 365 - 534
Target Start/End: Original strand, 1649 - 1818
Alignment:
Q  365 tggttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaatttt 464  Q
    ||||| ||||||| | ||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  1649 tggtttagtaaatttactgccacataggattaatgagcaaatcgtgccatgatggtctcgaaacgtggcacgatggtgggctttatgaaaccctaatttt 1748  T
Q  465 gtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacg 534  Q
     | ||||| |||||||||||||||||||   | || ||||||||||||||||| |||||||||| |||||    
T  1749 ttttctatgaaagccagaagcgaccagagattaggtgtgcgattttggagacctaaacagagcagagacg 1818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 192 - 540
Target Start/End: Complemental strand, 9748492 - 9748161
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||| ||||||| ||||||||| |||||| || |||||||||||| ||       || || |||  |||||||||| |||||||||| |||    
T  9748492 aagattcataaaatagaagttttgcacaaattggagaagaa-tgcaagaatttagcta------cttgagaaaccgtgccacgatagacctgaatcatgg 9748400  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| |||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||| |||||||||    
T  9748399 cacgtttgaagcgtggaatttaactgaagatgctggaaaaatcgtggcacgatggatgtgtaaagtgccacgatggttgagtatatttgcggccacgtag 9748300  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||              
T  9748299 gattaatgagcaaatcgttccacgatggtctcgaaacgtggcacgatggtgggctttctgaaaccctaattttgtgtctataaaagccag---------- 9748210  T
Q  492 aagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  9748209 aagcttggggtgcgattttggagacctaaacagagcatagacgacacca 9748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 192 - 533
Target Start/End: Complemental strand, 38316944 - 38316608
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    |||||||| |||||||||||| ||||||||| |||||| || |||||||||||| ||       || || |||| |||| ||||| ||||||||||||||    
T  38316944 aagattcacaaaagagaagttttgcacaaattggagaagaa-tgcaagaatttagcta------cttgagaaatcgtgctacgatagacctgaatcgtgg 38316852  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| || ||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||| |||    
T  38316851 cacgtttgaagcgtggaatttacctgaaaatgctggaaaaatcgtaacacgatggatgtgtaacgtgccacgatggttgagtaaatttgctgccacatag 38316752  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaattttgtgtctataaaagccagaagcgaccag 491  Q
    |||||||||| ||||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  38316751 gattaatgagcaaatcgtgccatgatggtctcgaaacgtggcacgatggtggactttctgaaaccctaattttgtgtctataaaagtcagaagcaaccag 38316652  T
Q  492 aagctt---ggggtgcgattttggagaccaaaacagagcatagac 533  Q
     || ||   || ||||||||||||||||| |||| ||||||||||    
T  38316651 -agattaaaggtgtgcgattttggagacctaaactgagcatagac 38316608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 192 - 532
Target Start/End: Complemental strand, 40678665 - 40678335
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| | |||| || |||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  40678665 aagattcataaaagagaagtt-tgcacaaattgaagaagaa-tgcaagaatttac----------tggagaaatcgtgccacgatggacctgaatcgtgg 40678578  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgtag 391  Q
    || |||||||| ||| ||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||    
T  40678577 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggacgtataacgtgccacgatggttgagtaaatttgctgccacgtag 40678478  T
Q  392 gattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacca 490  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| ||||||||||||||||| | ||||||||||||| | | |||| |     
T  40678477 gattaatgagcaaatcgtgccacgatggtctcgaaacgtggcacgattttgggcttttctgaaaccctaattctttgtctataaaagcaaaatgcgatcg 40678378  T
Q  491 gaa-gcttggggtgcgattttggagaccaaaacagagcataga 532  Q
    ||| |   |||| |||||||||||||| |||||||||||||||    
T  40678377 gaaggagaggggggcgattttggagacaaaaacagagcataga 40678335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 267 - 540
Target Start/End: Complemental strand, 30994554 - 30994280
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    |||||||||||||||| |||||||||| |||||||  ||| ||||||||| ||||| ||||||||||||||||||||| ||| |||||||| ||||||||    
T  30994554 gtgccacgatggacctaaatcgtggcacgtttgaaacgtggaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtaccacgatg 30994455  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtggg-ctttctgaaaccctaattttg 465  Q
     || ||||||| |||||||||||  |||||||||   |||||||||||||||  | ||||||||| ||| ||||||||  ||||||||||||||||| |     
T  30994454 atttagtaaatttgctgccacgtcagattaatgaaggaatcgtgccacgatggacgcgaaacgtgccacgatggtgggattttctgaaaccctaattctt 30994355  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||||  |||||| |||||||||    
T  30994354 tgtctataaaagtcagatgcgaccagaagcttagggtgcgattttggagacctaaacttagcataaacggcacca 30994280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 38325475 - 38325666
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || ||||| |||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  38325475 aagattcataaaagagaagttctgcacaaataggagaagaa-tgcaaaaatttagcta------ctggagaaatcgtgccacgatggacctgaatcgtgg 38325567  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||| |||| ||||| | ||||||||||    
T  38325568 cacgtttgaagcgtggaatttacctgaagatgctgaaaaaatcgtggcacgatggatgtgtaacatgccacgatgattgaataaatttactgccacgta 38325666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 192 - 390
Target Start/End: Complemental strand, 38327284 - 38327093
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || ||||| |||||| ||       ||||| |||| |||||||||||||||||||||||||    
T  38327284 aagattcataaaagagaagttctgcacaaataggagaagaa-tgcaaaaatttagcta------ctggagaaatcgtgccacgatggacctgaatcgtgg 38327192  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||| |||| ||||| | ||||||||||    
T  38327191 cacgtttgaagcgtggaatttacctgaagatgctgaaaaaatcgtggcacgatggatgtgtaacatgccacgatgattgaataaatttactgccacgta 38327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 377
Target Start/End: Original strand, 29434860 - 29435038
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||||||||||||||||| ||||||||| |||||| || |||||||||||| ||       ||||| ||||||||||||||||||||||| | ||||    
T  29434860 aagattcataaaagagaagttctgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaattgtgccacgatggacctgagttgtgg 29434952  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaat 377  Q
    || |||||||| ||  ||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||    
T  29434953 cacgtttgaagcgtagaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgcaacgtgccacgatgattgaataaat 29435038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 460
Target Start/End: Complemental strand, 2649051 - 2648970
Alignment:
Q  379 tgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaa 460  Q
    |||||||||||||||||||||||   |||||| ||||||    ||| |||||||||| ||||||||||||||||||||||||    
T  2649051 tgctgccacgtaggattaatgaggtgatcgtgtcacgattggatcgtaacgtggcacgatggtgggctttctgaaaccctaa 2648970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 4577072 - 4577134
Alignment:
Q  324 ctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgcca 386  Q
    ||||| ||||||||||||||| |||||||||| |||||||||| |||| ||||| | ||||||    
T  4577072 ctggagaaatcgtggcacgatggatgtgtaacatgccacgatgattgaataaatttactgcca 4577134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 460
Target Start/End: Original strand, 18011361 - 18011442
Alignment:
Q  379 tgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggctttctgaaaccctaa 460  Q
    ||||||||| ||||||||||||    ||| |||||||||    ||| ||||||||||||||||||||||||| |||||||||    
T  18011361 tgctgccacataggattaatgaagccatcttgccacgattggatcgtaacgtggcacaatggtgggctttctaaaaccctaa 18011442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 4577015 - 4577067
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    |||||| |||||||||||||| ||||||||| |||| || ||||||||||||||    
T  4577015 aagatttataaaagagaagttctgcacaaattggag-aagaatgcaagaattta 4577067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 30994618 - 30994566
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||  |||||||||    
T  30994618 aagattcataaaagagaagttttgcacaaattggag-aaaaatcaaagaattta 30994566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 30994514 - 30994474
Alignment:
Q  239 gaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  30994514 gaatttacctgaagatactggaaaaatcgtggcacgatgga 30994474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 143; Significance: 8e-75; HSPs: 2)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 267 - 540
Target Start/End: Complemental strand, 20513 - 20239
Alignment:
Q  267 gtgccacgatggacctgaatcgtggcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatg 366  Q
    |||| ||||||||||||||| |||||| |||||||| ||  ||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  20513 gtgctacgatggacctgaattgtggcacgtttgaagcgtagaatttacctgaagatactggaaaaatcgtggcacgatggatatgtaacgtgccacgatg 20414  T
Q  367 gttgagtaaatatgctgccacgtaggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttg 465  Q
    ||| ||||||| ||||||||| |  |||||||||   |||||||||||||||  | ||||||||||||| ||||||| | ||||||||||||||||| |     
T  20413 gtttagtaaatttgctgccacttcagattaatgaaggaatcgtgccacgatggacgcgaaacgtggcacgatggtggacttttctgaaaccctaattctt 20314  T
Q  466 tgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    |||||||||||| |||| |||||||||||| | ||||||||||||||||||| |||||||||||||||| |||||    
T  20313 tgtctataaaagtcagatgcgaccagaagcctagggtgcgattttggagacctaaacagagcatagacgacacca 20239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 20474 - 20433
Alignment:
Q  238 agaatttacctgaagatgctggaaaaattgtgccacgatgga 279  Q
    ||||||||||||||||| |||||||||| ||| |||||||||    
T  20474 agaatttacctgaagatactggaaaaatcgtggcacgatgga 20433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 192 - 540
Target Start/End: Original strand, 3787 - 4129
Alignment:
Q  192 aagattcataaaagagaagttat-gcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtg 290  Q
    ||||||||||||||||||||| | |||||||| |||||| || |||||||||||| ||       ||||| |||| || |||||||||||||||||||||    
T  3787 aagattcataaaagagaagttgttgcacaaattggagaagaa-tgcaagaatttagcta------ctggagaaatcgtaccacgatggacctgaatcgtg 3879  T
Q  291 gcatgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||| |||||||| ||| ||||||||| ||||| |||||||||| |||||||||| ||| ||||||| |||| ||||||| ||||||| |||||| || |     
T  3880 gcacgtttgaagcgtggaatttacctgaagatactggaaaaatagtggcacgatggatatgtaacgggccatgatggtttagtaaatttgctgcaacatc 3979  T
Q  391 ggattaatgagaaaatcgtgccacgatgctctcgaaacgtggcacaatggtgggc-tttctgaaaccctaattttgtgtctataaaagccagaagcgacc 489  Q
     |||||||||   |||||||||||||||  |  |||||||||||| ||||||||| ||||||||||||||||| | ||||||||||| ||||| |||| |    
T  3980 agattaatgaaggaatcgtgccacgatggacgtgaaacgtggcacgatggtgggcttttctgaaaccctaattctttgtctataaaatccagatgcgatc 4079  T
Q  490 agaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||||||| || |   ||||||||||| ||||| ||||||||||||||||    
T  4080 agaagcttgagg-ggatttttggagacctaaacaaagcatagacggcacca 4129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 16374 - 16565
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaatttacctgaagatgctggaaaaattgtgccacgatggacctgaatcgtgg 291  Q
    ||||||| ||||||||||||| | ||||||| |||||| || |||||||||||| ||       ||||| |||| |||| ||||||||||| ||||||||    
T  16374 aagattcttaaaagagaagttctacacaaattggagaagaa-tgcaagaatttaacta------ctggagaaatcgtgcaacgatggacctaaatcgtgg 16466  T
Q  292 catgtttgaagtgtgaaatttacctaaagatgctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    || |||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||    
T  16467 cacgtttgaagcgtggaatttacctgaagatgctggaaaaatcgtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactgccacgta 16565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 446 - 540
Target Start/End: Original strand, 13062 - 13156
Alignment:
Q  446 tttctgaaaccctaattttgtgtctataaaagccagaagcgaccagaagcttggggtgcgattttggagaccaaaacagagcatagacggcacca 540  Q
    ||||| ||||||||||| | ||||||||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||||||||||||    
T  13062 tttctaaaaccctaattctttgtctataaaagccagatgcgatcagaagcttggtgggcgatttaggagacctaaacagagcatagacggcacca 13156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 12829 - 12895
Alignment:
Q  324 ctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||    
T  12829 ctggagaaatcgtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactgccacgta 12895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 26845 - 26911
Alignment:
Q  324 ctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||    
T  26845 ctggagaaatcgtggcacgatggatgtgtaacgtgccacgatgattgaataaatttactgccacgta 26911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 16903 - 16969
Alignment:
Q  324 ctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||||| ||||||||||||||| |||||||||| |||||||||| |||| ||||| | ||||||||||    
T  16903 ctggagaaatcgtggcacgatggatgtgtaacatgccacgatgattgaataaatttactgccacgta 16969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 19287 - 19353
Alignment:
Q  324 ctggaaaaatcgtggcacgatagatgtgtaacgtgccacgatggttgagtaaatatgctgccacgta 390  Q
    ||||| ||||||||||||||| |||||||||| |||||||||| |||| ||||| | ||||||||||    
T  19287 ctggagaaatcgtggcacgatggatgtgtaacatgccacgatgattgaataaatttactgccacgta 19353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 16846 - 16898
Alignment:
Q  192 aagattcataaaagagaagttatgcacaaatcggagaaaaaatgcaagaattta 245  Q
    ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||    
T  16846 aagattcataaaagagaagttctgcacaaattggag-aagaatgcaagaattta 16898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 469259 - 469218
Alignment:
Q  259 gaaaaattgtgccacgatggacctgaatcgtggcatgtttga 300  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  469259 gaaaaatcgtgccacgatggacctgtatcgtggcacgtttga 469218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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