View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12039_low_1 (Length: 953)

Name: NF12039_low_1
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12039_low_1
NF12039_low_1
[»] chr8 (27 HSPs)
chr8 (19-938)||(36199656-36200576)
chr8 (50-258)||(36209550-36209759)
chr8 (351-521)||(37684380-37684547)
chr8 (66-258)||(36188106-36188301)
chr8 (64-258)||(36196427-36196620)
chr8 (265-521)||(32100962-32101216)
chr8 (317-487)||(32927833-32928000)
chr8 (351-434)||(44141077-44141160)
chr8 (118-262)||(36184162-36184305)
chr8 (315-465)||(13384653-13384800)
chr8 (314-433)||(38868435-38868555)
chr8 (823-938)||(36209332-36209447)
chr8 (351-491)||(16972037-16972174)
chr8 (439-491)||(32736522-32736574)
chr8 (202-262)||(36212010-36212070)
chr8 (717-752)||(36214268-36214303)
chr8 (269-346)||(32994339-32994416)
chr8 (221-262)||(36214305-36214346)
chr8 (353-433)||(4662931-4663011)
chr8 (372-427)||(32994276-32994331)
chr8 (372-430)||(7244632-7244690)
chr8 (204-262)||(36190574-36190632)
chr8 (204-262)||(36197997-36198055)
chr8 (216-258)||(36201811-36201853)
chr8 (442-487)||(9461515-9461560)
chr8 (316-433)||(26668492-26668609)
chr8 (477-545)||(29512900-29512969)
[»] chr6 (12 HSPs)
chr6 (268-522)||(4910800-4911052)
chr6 (275-546)||(25195283-25195550)
chr6 (327-522)||(3481997-3482190)
chr6 (267-433)||(5724658-5724824)
chr6 (374-522)||(6895891-6896037)
chr6 (315-425)||(765422-765532)
chr6 (350-522)||(16540081-16540251)
chr6 (351-495)||(993933-994074)
chr6 (319-433)||(6654118-6654232)
chr6 (315-427)||(26280544-26280656)
chr6 (365-432)||(852521-852588)
chr6 (303-382)||(6653736-6653815)
[»] scaffold0168 (1 HSPs)
scaffold0168 (267-522)||(31717-31973)
[»] chr4 (22 HSPs)
chr4 (267-487)||(35064953-35065171)
chr4 (268-522)||(33456266-33456516)
chr4 (272-515)||(21691160-21691409)
chr4 (351-434)||(50061655-50061738)
chr4 (554-663)||(43055784-43055893)
chr4 (315-521)||(16551896-16552098)
chr4 (351-482)||(32818352-32818480)
chr4 (374-487)||(8604599-8604709)
chr4 (261-381)||(2635048-2635168)
chr4 (384-521)||(53713504-53713638)
chr4 (396-543)||(45011894-45012039)
chr4 (371-434)||(55186989-55187052)
chr4 (371-469)||(14596684-14596781)
chr4 (555-673)||(45571278-45571396)
chr4 (318-402)||(25318989-25319074)
chr4 (369-433)||(9134603-9134667)
chr4 (314-434)||(53913604-53913724)
chr4 (406-491)||(4905856-4905938)
chr4 (365-432)||(9064220-9064287)
chr4 (353-427)||(30889764-30889838)
chr4 (372-433)||(30357508-30357569)
chr4 (262-295)||(54705557-54705590)
[»] chr1 (16 HSPs)
chr1 (260-522)||(2099628-2099885)
chr1 (377-522)||(30557505-30557646)
chr1 (372-433)||(7790670-7790731)
chr1 (570-663)||(10871008-10871101)
chr1 (406-491)||(34915096-34915178)
chr1 (384-487)||(7524121-7524221)
chr1 (439-491)||(35961428-35961480)
chr1 (352-521)||(38797572-38797738)
chr1 (372-473)||(11049246-11049344)
chr1 (271-433)||(28083916-28084078)
chr1 (587-672)||(30036600-30036685)
chr1 (378-543)||(3909863-3910026)
chr1 (269-432)||(6021695-6021860)
chr1 (265-357)||(30557405-30557497)
chr1 (315-427)||(31362239-31362347)
chr1 (371-429)||(50571279-50571337)
[»] chr2 (17 HSPs)
chr2 (351-522)||(33019097-33019266)
chr2 (372-501)||(43501121-43501245)
chr2 (552-681)||(43832668-43832797)
chr2 (268-433)||(2002723-2002888)
chr2 (367-502)||(11504024-11504155)
chr2 (553-681)||(1937073-1937201)
chr2 (349-521)||(22535971-22536141)
chr2 (444-522)||(9143040-9143119)
chr2 (268-434)||(30503101-30503267)
chr2 (562-681)||(39867229-39867348)
chr2 (367-487)||(42740968-42741084)
chr2 (351-473)||(10644578-10644697)
chr2 (439-491)||(16518838-16518890)
chr2 (439-536)||(26031962-26032060)
chr2 (448-523)||(13912856-13912932)
chr2 (439-484)||(680270-680315)
chr2 (458-522)||(6074479-6074544)
[»] chr5 (12 HSPs)
chr5 (372-522)||(42858104-42858252)
chr5 (374-491)||(6951278-6951392)
chr5 (369-509)||(38845436-38845574)
chr5 (374-521)||(18851024-18851169)
chr5 (275-433)||(11647981-11648139)
chr5 (365-427)||(9818723-9818785)
chr5 (554-706)||(16958304-16958453)
chr5 (374-487)||(14299328-14299434)
chr5 (552-612)||(19457100-19457160)
chr5 (351-433)||(34250379-34250461)
chr5 (315-427)||(1105378-1105492)
chr5 (372-439)||(18637280-18637349)
[»] chr3 (10 HSPs)
chr3 (269-517)||(25359520-25359765)
chr3 (552-663)||(21505640-21505751)
chr3 (351-507)||(52364026-52364179)
chr3 (268-391)||(38022329-38022451)
chr3 (410-507)||(52141205-52141299)
chr3 (397-484)||(31708219-31708303)
chr3 (315-430)||(54596757-54596872)
chr3 (439-523)||(46551207-46551293)
chr3 (321-434)||(47356272-47356385)
chr3 (269-382)||(48410891-48411004)
[»] chr7 (14 HSPs)
chr7 (406-491)||(42816441-42816523)
chr7 (406-491)||(25156230-25156312)
chr7 (315-492)||(22195803-22195977)
chr7 (353-473)||(35772235-35772352)
chr7 (321-468)||(41386811-41386955)
chr7 (372-432)||(1410958-1411018)
chr7 (439-487)||(32295244-32295292)
chr7 (356-473)||(40491558-40491672)
chr7 (317-427)||(44856843-44856948)
chr7 (349-411)||(40422765-40422828)
chr7 (439-501)||(9480572-9480634)
chr7 (488-541)||(22198192-22198246)
chr7 (488-541)||(22239575-22239629)
chr7 (367-491)||(27571853-27571974)
[»] scaffold0005 (1 HSPs)
scaffold0005 (371-469)||(220597-220694)


Alignment Details
Target: chr8 (Bit Score: 846; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 19 - 938
Target Start/End: Complemental strand, 36200576 - 36199656
Alignment:
Q  19 ttcattagttacactgcatacaccttggtcgtggtaagatt-ctcttgtttcttgcattactttcctatgtggttcagaaaagagagggaggaattcact 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  36200576 ttcattagttacactgcatacaccttggtcgtggtaagatttctcttgtttcttgcattattttcctatgtggttcagaaaagagagagaggaattcact 36200477  T
Q  118 ttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200476 ttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgtt 36200377  T
Q  218 ttcaaagtttcattt-agaattttggatattaatttggagtgtaagattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagt 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200376 ttcaaagtttcattttagaattttggatattaatttggagtgtaagattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagt 36200277  T
Q  317 gtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattcta 416  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200276 gtagaattgattatgacatgtttgcttgctggcaagtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattcta 36200177  T
Q  417 gaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattactttaaccaaaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  36200176 gaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaagcacaaatcatttttagtcagaattactttaaccaaaat 36200077  T
Q  517 caattccccccacctcacaatcaaacacatatgtcaggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagta 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200076 caattccccccacctcacaatcaaacacatatgtcaggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagta 36199977  T
Q  617 atggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggatatcctaacaga 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199976 atggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggatatcctaacaga 36199877  T
Q  717 ctatgttttgacctgataaataattatgtaattgtataggnnnnnnnnactatgtagggaatctcaatattttaggggatgctttattgattttcataca 816  Q
    ||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199876 ctatgttttga-ctgataaataattatgtaattgtataggttttttttactatgtagggaatctcaatattttaggggatgctttattgattttcataca 36199778  T
Q  817 gattcattggaatacaggttttaaaatttagtagtctgttctgcaaatgtcatttgatactatcatataccttttaaacaacattcattatgttttagat 916  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36199777 gattcattggaatacaggttttaaaatttagtagtctgttctgcaaatgtcatttgatactatcatatatcttttaaacaacattcattatgttttagat 36199678  T
Q  917 aatagactacgcagcttgatgt 938  Q
    ||||||||||||||||||||||    
T  36199677 aatagactacgcagcttgatgt 36199656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 36209759 - 36209550
Alignment:
Q  50 tggtaagatt-ctcttgtttcttgcattactttcctatgtggttcagaaaagagagggaggaattcactttcctctttgacaaaatagtttgaactcggt 148  Q
    |||||||||| | ||||||||||||| || |||||| ||||||||   |||| |||||| |||||||| ||||||| | | || || |||||||||  ||    
T  36209759 tggtaagatttcccttgtttcttgcagtaatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaactatgt 36209660  T
Q  149 ttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcatttagaattttggatatta 248  Q
    ||||||||||| |||||||||||||||| |||||||||||||  | ||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||||    
T  36209659 ttggtatggttggttctgttaacaagtcattgtttgctaaatagtataacatattgtagctgttttattttcaaagtttaatttagatttttgaatatta 36209560  T
Q  249 atttggagtg 258  Q
    | ||||||||    
T  36209559 acttggagtg 36209550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 351 - 521
Target Start/End: Original strand, 37684380 - 37684547
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 450  Q
    |||||||||| || || ||||||||||||||| ||||||||||| ||||||| | ||||||||||| |||||||||| |  ||   | ||||||||||||    
T  37684380 agtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgca---aaaatttataattc 37684476  T
Q  451 aattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattactttaaccaaaatcaatt 521  Q
    || |||||||||||| |||||||  |||||||||||| ||||||||  |||||||| ||||| ||||||||    
T  37684477 aactcacttttacataaatgtatccaaacacaaatcacttttagtcaaaattacttaaaccacaatcaatt 37684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 36188301 - 36188106
Alignment:
Q  66 tttcttgcattactttcctatgtggttcagaaaagagagggaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttct 165  Q
    ||||||||| || |||||| ||||| ||   |||| ||||| ||||||||| ||||||| | | ||||| ||||||||| |||||||||||||| |||||    
T  36188301 tttcttgcagtaatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttct 36188202  T
Q  166 gtt---aacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 258  Q
    |||   |||||||| | |||||||||||  | ||| |||||||| ||||||  |||||||||||| ||||||||||||| ||||||| ||||||||    
T  36188201 gttgttaacaagtcatggtttgctaaatagtataacatattgtaactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtg 36188106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 64 - 258
Target Start/End: Complemental strand, 36196620 - 36196427
Alignment:
Q  64 tgtttcttgcattactttcctatgtggttcagaaaagagagggaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagtt 163  Q
    ||||||||||| || |||| | ||||||||   |||| ||||||||||||||||||| ||||||| ||||| |||||||||  |||||| ||||||  ||    
T  36196620 tgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgctt 36196521  T
Q  164 ctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 258  Q
    |||||||||||||  | ||||||||||  | ||  |||||||||||||||| |||||||| ||| ||||||| ||||  ||||||| ||||||||    
T  36196520 ctgttaacaagtcact-tttgctaaatagtatagcatattgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtg 36196427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 265 - 521
Target Start/End: Original strand, 32100962 - 32101216
Alignment:
Q  265 tatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgttta 364  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||   |||||||||||||| |||||| |||| ||  ||  || |||||||| |||    
T  32100962 tatgtgtatgtttggttccacttttagagggactagagttgattctgaatgtgtagaattgattctgacatgtttggttaatgttaactagaattgatta 32101061  T
Q  365 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttaca 464  Q
    || || ||||| | |||| |||| ||||||  |||||| | |||| ||| || |||| ||||||| |   |   |||||||| ||||| |||||||||||    
T  32101062 tgtcttcagaactaattctacttaaagttagaatttgtagtttttaattttaaaattaattttcata---tacaaatttatagttcaactcacttttaca 32101158  T
Q  465 tgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaatt 521  Q
    | |||||||  | |||||||||| ||||  ||| |||||  |||||||||||||||||    
T  32101159 taaatgtatccacacacaaatcacttttgatcgtaattatttttaaccaaaatcaatt 32101216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 317 - 487
Target Start/End: Original strand, 32927833 - 32928000
Alignment:
Q  317 gtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattcta 416  Q
    |||||||||| | |||||| |||| |||||  | |||||||||| || |||||| | | ||||||| |||||||| || ||||||| | |||||||| ||    
T  32927833 gtagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 32927932  T
Q  417 gaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatca 487  Q
    ||||| ||||| |||||     |||||||| ||||| ||||||||||||||||||||  ||||||||||||    
T  32927933 gaattcatttttacacaca---aatttatagttcaactcacttttacatgaatgtatccaaacacaaatca 32928000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 44141160 - 44141077
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 434  Q
    |||||||||| || |||||||| ||||||||| ||||||||||| ||||||| | ||||||||||||| |||||||||||||||    
T  44141160 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacat 44141077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 118 - 262
Target Start/End: Complemental strand, 36184305 - 36184162
Alignment:
Q  118 ttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgtt 217  Q
    |||||||| || ||||| |||||||||  ||||||||||||| |||||||||||| |||  | ||||||||||  | ||| |||||||| ||||||| ||    
T  36184305 ttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgttaacatgtcact-tttgctaaatagtataacatattgtaactgttttatt 36184207  T
Q  218 ttcaaagtttcatttagaattttggatattaatttggagtgtaag 262  Q
    |||||||||   |||||||||||| | ||||| || |||||||||    
T  36184206 ttcaaagttaagtttagaattttgaaaattaactttgagtgtaag 36184162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 315 - 465
Target Start/End: Complemental strand, 13384800 - 13384653
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    |||||||||||||| |||||| |||| ||| || | ||| |||||  || |  ||||| ||||||||| | |||||| ||  |||||| | |||||||||    
T  13384800 gtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaatttgtagcttttgattc 13384701  T
Q  415 tagaattgattttcacacatttataatttataattcaattcacttttacat 465  Q
    |||||||||||||||||||     |||||||| ||||| ||||||||||||    
T  13384700 tagaattgattttcacaca---caaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 314 - 433
Target Start/End: Original strand, 38868435 - 38868555
Alignment:
Q  314 agtgtagaattgattatgacat-ttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgat 412  Q
    ||||||||||||||| ||| || ||||| ||| || | |||| ||||| | ||||||| | ||||||||| |||||||| || ||||||| | ||||| |    
T  38868435 agtgtagaattgattctgatatattttggttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggt 38868534  T
Q  413 tctagaattgattttcacaca 433  Q
    |||| ||||||||||||||||    
T  38868535 tctataattgattttcacaca 38868555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 823 - 938
Target Start/End: Complemental strand, 36209447 - 36209332
Alignment:
Q  823 ttggaatacaggttttaaaatttagtagtctgttctgcaaatgtcatttgatactatcatataccttttaaacaacattcattatgttttagataataga 922  Q
    |||||||||| |||||| |||||| |||||||||  |   ||||||||||||||||||  |   |||||||||| ||||||||||| ||||||| |||||    
T  36209447 ttggaatacaagttttataatttattagtctgtttggttgatgtcatttgatactatctcaactcttttaaacaccattcattatgctttagatgataga 36209348  T
Q  923 ctacgcagcttgatgt 938  Q
    ||  | ||||||||||    
T  36209347 ctctgtagcttgatgt 36209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 491
Target Start/End: Complemental strand, 16972174 - 16972037
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 450  Q
    |||||||||| || ||||| |||| ||||||  | |||||| ||  |||||| | |||| ||| ||||||||||||| | |||     |||||||  |||    
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacaca---aatttattgttc 16972078  T
Q  451 aattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    || ||||||||||||||||||||| ||||||||||||||||    
T  16972077 aaatcacttttacatgaatgtattcaaacacaaatcatttt 16972037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 32736522 - 32736574
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||||| |||||    
T  32736522 aatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttt 32736574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 36212070 - 36212010
Alignment:
Q  202 ttgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 262  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| || | |||||||||    
T  36212070 ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaag 36212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 717 - 752
Target Start/End: Complemental strand, 36214303 - 36214268
Alignment:
Q  717 ctatgttttgacctgataaataattatgtaattgta 752  Q
    ||||||||||||||||||||||||||||||||||||    
T  36214303 ctatgttttgacctgataaataattatgtaattgta 36214268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 32994416 - 32994339
Alignment:
Q  269 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgct 346  Q
    ||||||||||||||||||||||||| |  |  | ||||||||||  |||||||||||||||||| || |||| |||||    
T  32994416 tgtatgtttggttccacttctagagaggttgtaattgattctggatgtgtagaattgattatgatatgtttggttgct 32994339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 36214346 - 36214305
Alignment:
Q  221 aaagtttcatttagaattttggatattaatttggagtgtaag 262  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  36214346 aaagtttcatttagaattttggatactgatttggagtgtaag 36214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 353 - 433
Target Start/End: Complemental strand, 4663011 - 4662931
Alignment:
Q  353 tagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    |||||||| || ||| ||| ||||| |||| |||||||| || ||||||| | ||||| |||||||||||||||| |||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacaca 4662931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 32994331 - 32994276
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 427  Q
    ||||||||||| |||||||| |||||||| | | |||||| |||||||||||||||    
T  32994331 agaattgattctacttgaagctatgatttctagcttttgagtctagaattgatttt 32994276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 7244690 - 7244632
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcac 430  Q
    ||||||||||| |||||||  || ||| ||| | |||||||||||||||||||||||||    
T  7244690 agaattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcac 7244632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 36190632 - 36190574
Alignment:
Q  204 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 262  Q
    |||| |||||| |||||||||||| ||||| ||||||||||||| || | |||||||||    
T  36190632 gtagttgttttattttcaaagtttaatttaaaattttggatattgatctagagtgtaag 36190574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 36198055 - 36197997
Alignment:
Q  204 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 262  Q
    |||| |||||| |||||||||||||||||| || |||||||||| || |||||| ||||    
T  36198055 gtagttgttttattttcaaagtttcatttataaatttggatattgatctggagtttaag 36197997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 36201853 - 36201811
Alignment:
Q  216 ttttcaaagtttcatttagaattttggatattaatttggagtg 258  Q
    |||||||||||||||||||||||||||||| | |||| |||||    
T  36201853 ttttcaaagtttcatttagaattttggataatgattttgagtg 36201811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 9461560 - 9461515
Alignment:
Q  442 ttataattcaattcacttttacatgaatgtattgaaacacaaatca 487  Q
    ||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  9461560 ttataattcaactcacttttatatgaatgtatccaaacacaaatca 9461515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 433
Target Start/End: Original strand, 26668492 - 26668609
Alignment:
Q  316 tgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattct 415  Q
    ||||||||||||| | |||| |||| ||  || | |||||||||| || |||||||| ||||||||| |||| ||  ||  |||||| | |||| |||||    
T  26668492 tgtagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattct 26668591  T
Q  416 agaattgattttcacaca 433  Q
    | |||||||| |||||||    
T  26668592 ataattgattctcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 545
Target Start/End: Original strand, 29512900 - 29512969
Alignment:
Q  477 aacacaaatcatttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaacaca 545  Q
    ||||||||||| ||||||||  ||| ||||| ||||||||||||||| || |||| ||||| ||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacaca 29512969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 268 - 522
Target Start/End: Original strand, 4910800 - 4911052
Alignment:
Q  268 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 367  Q
    |||||||||||||||||||| ||||| || |  | |||||||||   |||||||||||||| |||||| |||| |||  | ||| |||||||| || |||    
T  4910800 gtgtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgc 4910899  T
Q  368 ctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatga 467  Q
    ||| | ||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||   |   |||||||| ||| | |||||||||||| |    
T  4910900 ctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcaca---tacaaatttatagttcgactcacttttacataa 4910996  T
Q  468 atgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 522  Q
    ||||||  ||||| |||||| |||||||| ||||||| |||||||||||| |||||    
T  4910997 atgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattc 4911052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 275 - 546
Target Start/End: Complemental strand, 25195550 - 25195283
Alignment:
Q  275 tttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccaga 374  Q
    |||||||||||||||||||| |    | ||||||||||  ||||| |||||||| |||||| |||| |||||  | |||| ||||| || ||||||| ||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccgga 25195451  T
Q  375 attgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtatt 474  Q
    |||||||| ||||||||    ||||||| | |||| |||||| |||||||||||| |||     |||||| ||||||| |||||||||||| |||||||     
T  25195450 attgattctacttgaagcg--gatttgtagtttttcattctataattgattttcatacaca---aatttacaattcaactcacttttacataaatgtatc 25195356  T
Q  475 gaaacacaaatcatttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaacacat 546  Q
     |||||||||||| ||||| |  |||||||||| ||| ||||||||||| | ||| | ||||| |||||||||    
T  25195355 caaacacaaatcacttttaattagaattactttgaactaaaatcaattctctccaacgcacaaccaaacacat 25195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 327 - 522
Target Start/End: Original strand, 3481997 - 3482190
Alignment:
Q  327 ttatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattt 426  Q
    ||||||||| |||| ||| || || ||||||||| || || ||  ||||||||||  ||||||||||| ||||||| |  ||||||| ||||||||||||    
T  3481997 ttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattt 3482096  T
Q  427 tcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattc 522  Q
    |||||||     | |||||| ||||| | ||||||||||||||||||| |||||||||||| ||||| |  |||| |  ||||||||||||||||||    
T  3482097 tcacaca---caagtttatagttcaacttacttttacatgaatgtattcaaacacaaatcacttttattgagaatcatttttaaccaaaatcaattc 3482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 267 - 433
Target Start/End: Complemental strand, 5724824 - 5724658
Alignment:
Q  267 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatg 366  Q
    |||||||||||||||||||||||||||||     | || ||||| | ||||||||||||||| |||||| ||||  ||||  || ||||||||| || ||    
T  5724824 tgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttg 5724725  T
Q  367 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    |||||| ||||||||| |||||||| || |||||||   |||| |||||| |||||||||| |||||    
T  5724724 cctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 374 - 522
Target Start/End: Complemental strand, 6896037 - 6895891
Alignment:
Q  374 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 473  Q
    ||||||||| || |||||||| ||||||| | |||||||||||||||| |||||| ||||  |||   |||||  | |||||||||||||||||||||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcacacgtat---ttatagataaattcacttttacatgaatgtat 6895941  T
Q  474 tgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattc 522  Q
      ||| ||||| || ||||||||  |||||  ||||||||||||||||||    
T  6895940 caaaaaacaaaccacttttagtcaaaattagttttaaccaaaatcaattc 6895891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 425
Target Start/End: Complemental strand, 765532 - 765422
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    |||||||||||||| |||| | |||| |||||   |||||||| || || || ||| ||||||||||| |||||||| |||||||||| | |||||||||    
T  765532 gtgtagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattc 765433  T
Q  415 tagaattgatt 425  Q
    |||||||||||    
T  765432 tagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 350 - 522
Target Start/End: Original strand, 16540081 - 16540251
Alignment:
Q  350 aagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttata-atttataat 448  Q
    ||||| ||||| || || ||||| ||||||||| |||||||| || ||||||| | |||||||| | ||||||| ||||||    ||| | ||||||| |    
T  16540081 aagtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcac----ttacatatttatagt 16540176  T
Q  449 tcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattactt-taaccaaaatcaattc 522  Q
    | || |||||||||||| |||||||  ||||||||| || || | || |||||||||| ||||||||||||||||    
T  16540177 taaactcacttttacatcaatgtatccaaacacaaaccacttctggttggaattacttctaaccaaaatcaattc 16540251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 495
Target Start/End: Original strand, 993933 - 994074
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 450  Q
    |||||||||| |||| |||| |||||| |||  ||||||||||||||||| |   |||||||  || |||||||||| | |||| ||    ||||  |||    
T  993933 agtagaattgattatacctcaagaattaattttacttgaagttatgatttttaacttttgatcatataattgatttttaaacatatag---ttattgttc 994029  T
Q  451 aattcacttttacatgaatgtattgaaacacaaatcatttttagt 495  Q
    |||||||||||| ||||||||||| ||| |||||||| |||||||    
T  994030 aattcacttttatatgaatgtatttaaatacaaatcagttttagt 994074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 433
Target Start/End: Complemental strand, 6654232 - 6654118
Alignment:
Q  319 agaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctaga 418  Q
    ||||||||||||| ||| |||| |||||    |||||||||| || | ||| ||||||| |||| |||||||| || ||||||| | |||| ||||||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctaga 6654133  T
Q  419 attgattttcacaca 433  Q
     ||||||||||||||    
T  6654132 tttgattttcacaca 6654118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 26280544 - 26280656
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    |||||||||||||| |||||| |||| ||| |     ||||||||| || |||||| ||||||||||| |||||||| ||  |||||| | |||||||||    
T  26280544 gtgtagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattc 26280643  T
Q  415 tagaattgatttt 427  Q
     | ||||||||||    
T  26280644 caaaattgatttt 26280656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 852521 - 852588
Alignment:
Q  365 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 432  Q
    |||||||| |||||||||||||||||| ||  | |||| | || ||||||||||||||||||| ||||    
T  852521 tgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 6653736 - 6653815
Alignment:
Q  303 ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattc 382  Q
    ||||||||||  ||||| |||||||| |||| | |||| |||||| |||||||||||| || |||||| | |||||||||    
T  6653736 ttgattctggcggtgtataattgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattc 6653815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 267 - 522
Target Start/End: Original strand, 31717 - 31973
Alignment:
Q  267 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatg 366  Q
    ||||||||||||||||||||||||||| ||    | |||||||| |  |||||||||||||| |||||| |||| ||| || | |||| ||||| || ||    
T  31717 tgtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctg 31816  T
Q  367 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataatt---caattcacttttac 463  Q
    |||||| ||||||||  |||||||| || ||||||| | |||||||| | ||||||||||||||| |  |   ||||||| ||   ||| ||||||||||    
T  31817 cctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcacatacat---atttatagttaaacaactcacttttac 31913  T
Q  464 atgaatgtattgaaacacaaatcatttttagtcggaattactt-taaccaaaatcaattc 522  Q
    || |||||||  ||||||||| || || |||| |||||||||| ||||||||||||||||    
T  31914 ataaatgtatccaaacacaaaccacttctagttggaattacttctaaccaaaatcaattc 31973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 267 - 487
Target Start/End: Original strand, 35064953 - 35065171
Alignment:
Q  267 tgtgtatgttt-ggttccacttctagagggagtcgag-ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgttta 364  Q
    ||||||||||| |||||||||||| ||||| ||| |  |||||| |||  |||||||||||||||||||||||||| |||||  | |||||||||| ||     
T  35064953 tgtgtatgttttggttccacttctcgaggg-gtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattt 35065051  T
Q  365 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttaca 464  Q
    |||||| | ||||||||  |||||||| ||  ||||||   |||||||||||||||||||||| |||||     ||||||||  || | |||||||||||    
T  35065052 tgcctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacaca---caaatttatatctccactcacttttaca 35065148  T
Q  465 tgaatgtattgaaacacaaatca 487  Q
    |||||||||  ||||||||||||    
T  35065149 tgaatgtatccaaacacaaatca 35065171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 268 - 522
Target Start/End: Original strand, 33456266 - 33456516
Alignment:
Q  268 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 367  Q
    ||||||||||||||||||||||||||||| |  | |||||| ||   ||||||||||||||||||||| |||  ||| || | | |||||||| ||  |     
T  33456266 gtgtatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgattccgt 33456365  T
Q  368 ctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatga 467  Q
    ||| |||||| |||| | || ||  |||||||||| | ||||||||||| |||||||||||||| |     ||| |||| |||||||||||||||||  |    
T  33456366 ctctagaatttattctatttaaaactatgatttgtagcttttgattctataattgattttcacata-----aatctatagttcaattcacttttacacaa 33456460  T
Q  468 atgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 522  Q
    | ||||| ||||| |||| | |||| |||  |||||| ||||||||||||||||||    
T  33456461 aagtattcaaacataaataacttttggtcaaaattacttttaaccaaaatcaattc 33456516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 272 - 515
Target Start/End: Complemental strand, 21691409 - 21691160
Alignment:
Q  272 atgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattg--------ttt 363  Q
    |||||||||||||||||||||||||   || ||||||||||  |||||||||||||| |||||| |||| ||| || | ||||| ||||        |||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgattctactttt 21691310  T
Q  364 atgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttac 463  Q
     || |   |||||||||||||||||||  || ||||||| | ||||| || |||||||||||||||||||     |||||||| |||||  |||||||||    
T  21691309 ttgacagaagaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacaca---caaatttatagttcaacacacttttac 21691213  T
Q  464 atgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaa 515  Q
    |||||| |||  |||||||||||| || ||||| |||| || |||||||||||    
T  21691212 atgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 50061738 - 50061655
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 434  Q
    |||||||||| || |||||||| ||||||||| ||||||||||| ||||||| | ||||||||||||| |||||||||||||||    
T  50061738 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacat 50061655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 554 - 663
Target Start/End: Original strand, 43055784 - 43055893
Alignment:
Q  554 gaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaatt 653  Q
    ||||||| ||||| | |||||||||||||||| |||||||||| |||||||||||| ||   |||| |||||| |||||| | ||||||| || ||||||    
T  43055784 gaaccttacttttggcatatggaaagaattcccaaaactgggcagaaatgaataaataagagaatgattctaactagaataaagattgataaacaaaatt 43055883  T
Q  654 gagaaaagaa 663  Q
    ||||||||||    
T  43055884 gagaaaagaa 43055893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 315 - 521
Target Start/End: Original strand, 16551896 - 16552098
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    |||||||||||||| |||||| | || |||||| | | ||||  || || |||||| || || |||||  ||||||| || ||||||| | ||||  |||    
T  16551896 gtgtagaattgattctgacatgtatggttgctgtcgaatagagctgattctgcctctaggatggattctccttgaagctaggatttgtagtttttagttc 16551995  T
Q  415 tagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaa 513  Q
    |||||||||||||||||||     |||||||| ||||| ||||||||||||||||||||  || | |||||||  |||| ||  |||||| |||||||||    
T  16551996 tagaattgattttcacaca-----aatttatagttcaactcacttttacatgaatgtatccaatctcaaatcacgtttaatcataattacttttaaccaa 16552090  T
Q  514 aatcaatt 521  Q
    ||||||||    
T  16552091 aatcaatt 16552098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 351 - 482
Target Start/End: Complemental strand, 32818480 - 32818352
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt--cacacatttataatttataat 448  Q
    |||||||||| || |||||||||||||||||| | |||||| ||  |||||| | ||||||||||||||||||||||  ||||||     |||||||| |    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacaca-----aatttatagt 32818386  T
Q  449 tcaattcacttttacatgaatgtattgaaacaca 482  Q
    |||| | ||||||||||||||||||  |||||||    
T  32818385 tcaactaacttttacatgaatgtatccaaacaca 32818352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 374 - 487
Target Start/End: Complemental strand, 8604709 - 8604599
Alignment:
Q  374 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 473  Q
    ||||||||| |||||||| || ||||||| | ||| ||||||||||||||||||||||||     |||||||| || ||| |||||||||||||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacaca---caaatttatagttgaatgcacttttacatgaatgtat 8604613  T
Q  474 tgaaacacaaatca 487  Q
      ||||| ||||||    
T  8604612 ccaaacataaatca 8604599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 261 - 381
Target Start/End: Original strand, 2635048 - 2635168
Alignment:
Q  261 agattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattg 360  Q
    |||||| |||||||||||||| ||||| ||||||||    | |||||||| | |||||| |||||||| |||||| |||| |||||   |||||||| ||    
T  2635048 agattaagtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactg 2635147  T
Q  361 tttatgcctccagaattgatt 381  Q
     || |||||||||||||||||    
T  2635148 attttgcctccagaattgatt 2635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 384 - 521
Target Start/End: Complemental strand, 53713638 - 53713504
Alignment:
Q  384 acttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaa 483  Q
    |||||||| || ||||||| | ||||||||||| |||||| || |||| |  ||||   |||| ||||| |||||||||||||||||| |  ||||||||    
T  53713638 acttgaagctacgatttgtagcttttgattctataattgacttccacataaatata---tatagttcaactcacttttacatgaatgtgtccaaacacaa 53713542  T
Q  484 atcatttttagtcggaattactttaaccaaaatcaatt 521  Q
    || || |||||||  ||||||||| | |||||||||||    
T  53713541 attatgtttagtcaaaattacttttaacaaaatcaatt 53713504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 543
Target Start/End: Original strand, 45011894 - 45012039
Alignment:
Q  396 gatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagt 495  Q
    ||||||| | ||||||||||||||||||||||||||||     |||||||||||  | ||||||||| ||||||||||| |||| |||| || |||||||    
T  45011894 gatttgtagcttttgattctagaattgattttcacaca---caaatttataattttactcacttttatatgaatgtattcaaacccaaaccacttttagt 45011990  T
Q  496 cggaattac-tttaaccaaaatcaattccccccacctcacaatcaaaca 543  Q
      |||| || ||||| | |||| ||||| | || || ||||||||||||    
T  45011991 gagaatcacttttaatcgaaataaattctcaccgccgcacaatcaaaca 45012039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 55187052 - 55186989
Alignment:
Q  371 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 434  Q
    |||||||||||| ||||||||||| |||||||   |||| ||| ||||||||||||||||||||    
T  55187052 cagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacat 55186989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 469
Target Start/End: Original strand, 14596684 - 14596781
Alignment:
Q  371 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaat 469  Q
    |||||||||||| |||||||| |||| ||||  | |||||||||||||||||||||| | | |   | |||||||| ||||||||||||||| ||||||    
T  14596684 cagaattgattctacttgaagctatgttttgcagtttttgattctagaattgatttttagata-caaaaatttatagttcaattcacttttatatgaat 14596781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 555 - 673
Target Start/End: Original strand, 45571278 - 45571396
Alignment:
Q  555 aacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattg 654  Q
    |||||||||||| |||||||||||   || | ||||| |||| || ||||||| ||||   ||||  ||||| ||| |||| |||||||||| |||||||    
T  45571278 aacctttcttttggtatatggaaattttttccaaaacagggcagacatgaatagacaatagaatgactctaactaggatgaagattgatcaacaaaattg 45571377  T
Q  655 agaaaagaaaatttctttt 673  Q
    ||||||||| |||| ||||    
T  45571378 agaaaagaagatttttttt 45571396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 25318989 - 25319074
Alignment:
Q  318 tagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattc-aacttgaagttatgatttgt 402  Q
    ||||||||||| |||||| |||| |||||  | |||||||||| || || ||||||||||||||| ||||||||| || |||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgt 25319074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 9134603 - 9134667
Alignment:
Q  369 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    |||||||||||| | |||||||| ||  |||||| | |||||||| |||||||||||||||||||    
T  9134603 tccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 314 - 434
Target Start/End: Complemental strand, 53913724 - 53913604
Alignment:
Q  314 agtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgatt 413  Q
    ||||| |||||||||  ||||| |||| ||| || | |||||||||| || |||||  | ||||||||  |||| ||| |||||||| ||  || |||||    
T  53913724 agtgttgaattgattccgacatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgatt 53913625  T
Q  414 ctagaattgattttcacacat 434  Q
    ||| |||||||||||||||||    
T  53913624 ctataattgattttcacacat 53913604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 4905938 - 4905856
Alignment:
Q  406 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    ||||||||| |||||||||||| | |||   | |||||| | |||||| ||||||||||| |||||||| |||||||||| |||||    
T  4905938 ttttgattcaagaattgatttttaaaca---agaatttacagttcaatccacttttacataaatgtattcaaacacaaattatttt 4905856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 9064220 - 9064287
Alignment:
Q  365 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 432  Q
    |||| ||| ||||||||| |||||||  ||  |||||| | |||||||||||||||||||||||||||    
T  9064220 tgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacac 9064287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  353 tagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 427  Q
    |||||||| || || ||| ||||||||||| ||||| | ||| |||||||  ||||||||| |||||||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 30357508 - 30357569
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    ||||||||||| |||||||| | |||||||| | |||||||| || |||||||||| |||||    
T  30357508 agaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacaca 30357569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 54705590 - 54705557
Alignment:
Q  262 gattatgtgtatgtttggttccacttctagaggg 295  Q
    |||| |||||||||||||||||||||||||||||    
T  54705590 gattttgtgtatgtttggttccacttctagaggg 54705557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 260 - 522
Target Start/End: Complemental strand, 2099885 - 2099628
Alignment:
Q  260 aagattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaatt 359  Q
    ||||||| ||| ||||||||||||  |||||||||   | || ||||||||||  ||||||||||||||||||| | |||| ||| || | |||||||||    
T  2099885 aagattaagtgaatgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgacttgtttgattgatgtcgagtagaatt 2099788  T
Q  360 gtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattca-ct 458  Q
    | || |  ||||||||||||||  | |||||| |  ||||||| ||||||| || ||||||||||||||||||||    ||||||||  |||| |||  |    
T  2099787 gattgt--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacat---aaatttatagctcaactcattt 2099693  T
Q  459 tttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 522  Q
    |||| ||||||||||  |||||||||||| ||||| ||  |||||| ||||||||||||||||||    
T  2099692 tttatatgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattc 2099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 377 - 522
Target Start/End: Original strand, 30557505 - 30557646
Alignment:
Q  377 tgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattga 476  Q
    |||||| | |||||| || ||||||| | ||||||||||||||||||||||||||||     |||||||| ||||| ||||||||| ||||||||||  |    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacaca-----aatttatagttcaactcacttttatatgaatgtatcca 30557599  T
Q  477 aacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 522  Q
    ||||||||||| || ||||| || | || ||||||||||||||||||    
T  30557600 aacacaaatcacttctagtcagagtcacttttaaccaaaatcaattc 30557646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 7790731 - 7790670
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| |||||    
T  7790731 agaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacaca 7790670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 570 - 663
Target Start/End: Complemental strand, 10871101 - 10871008
Alignment:
Q  570 atatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaagaa 663  Q
    |||||||||||||||| |||||| ||| |||||||||||||||   |||  ||| || || ||| | |||||||||||||||||||||||||||    
T  10871101 atatggaaagaattcccaaaacttggcagaaatgaataaacaagagaataattccaactaaaataaagattgatcaataaaattgagaaaagaa 10871008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 34915096 - 34915178
Alignment:
Q  406 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    |||||||||||||||||||| | |||||     | |||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  34915096 ttttgattctagaattgattctaacacacc---attttataattcaactcacttttacatgaatgtattcaaacataaatcatttt 34915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 384 - 487
Target Start/End: Original strand, 7524121 - 7524221
Alignment:
Q  384 acttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaa 483  Q
    ||||||||||| ||||||| | |||||||| ||||||||||||| |||||     |||||||| ||||| |||||||||||| ||||| |  ||||||||    
T  7524121 acttgaagttaggatttgtagcttttgattatagaattgatttttacaca---caaatttatagttcaactcacttttacataaatgtgtccaaacacaa 7524217  T
Q  484 atca 487  Q
    ||||    
T  7524218 atca 7524221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 35961428 - 35961480
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    |||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  35961428 aatttaaaattcaactcacttttacatgaatgtatagaaacataaatcatttt 35961480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 521
Target Start/End: Complemental strand, 38797738 - 38797572
Alignment:
Q  352 gtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattca 451  Q
    ||||||||| ||||||||||  ||||||||  |||||||||||||||||||   || | | || ||||||||||||||||||     |||||||| ||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacaca---caaatttatagttca 38797642  T
Q  452 attcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaatt 521  Q
    | ||||||||| || |||||||  ||||| |||||| ||||| ||  | |||  |||||||||||||||||    
T  38797641 actcacttttaaat-aatgtatgcaaacataaatcacttttaatcaaatttatttttaaccaaaatcaatt 38797572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 372 - 473
Target Start/End: Original strand, 11049246 - 11049344
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgt 471  Q
    ||||| ||||| |||||||| || ||||||| | ||||||||||| |||||||||| |||||     |||||||| ||||| |||||||||| |||||||    
T  11049246 agaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacaca---caaatttatagttcaagtcacttttacgtgaatgt 11049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 271 - 433
Target Start/End: Complemental strand, 28084078 - 28083916
Alignment:
Q  271 tatgtttggttccacttctagagggagtcgag-ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcct 369  Q
    |||||||| ||||||||||||||| || | |  |||| ||||| ||||||||||||||| |||||| |||| ||| |  | |||||||||| || || ||    
T  28084078 tatgtttgattccacttctagagg-agccaaaattgactctggtagtgtagaattgattctgacatatttggttgttttcgagtagaattgattttgtct 28083980  T
Q  370 ccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
     |  ||||||||| |||||||| ||  |||||| | ||||||||||| |||| ||||| |||||    
T  28083979 tcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacaca 28083916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 672
Target Start/End: Original strand, 30036600 - 30036685
Alignment:
Q  587 aaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttt 672  Q
    |||||| ||| ||||||||||||| |   |||| |||||| |||||| | |||||||||| |||||||||||||||| | ||||||    
T  30036600 aaaacttggcagaaatgaataaactagagaatgattctaaatagaataaagattgatcaaaaaaattgagaaaagaagaattcttt 30036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 543
Target Start/End: Original strand, 3909863 - 3910026
Alignment:
Q  378 gattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaa 477  Q
    |||||| |||||||||| ||| ||| |||||| ||| |||||||||||||||||||     |||| ||| || || |||| |||||| |||| |||| ||    
T  3909863 gattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca---caaattcatactttaactcacgtttacacgaatctattcaa 3909959  T
Q  478 acacaaatcatttttagtcggaattac-tttaaccaaaatcaattccccccacctcacaatcaaaca 543  Q
    | |||||| | |||||||  |||| || ||||| ||| |||||||||||| | | ||||| ||||||    
T  3909960 atacaaattacttttagttagaatcacttttaatcaatatcaattccccctatcgcacaaccaaaca 3910026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 269 - 432
Target Start/End: Original strand, 6021695 - 6021860
Alignment:
Q  269 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaat---tgattatgacatttttgcttgctggcaagtagaattgtttat 365  Q
    ||||||||||||||||||| | |||| |||  | |||||||| |  |||||||||   ||||| |||||  |||| ||| |  |||||||||||| || |    
T  6021695 tgtatgtttggttccacttttggagg-agttaaattgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T
Q  366 gcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 432  Q
    ||||| ||||| ||||| |||||||| || ||| ||| | ||||||||||| ||| |||||| ||||    
T  6021794 gcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacac 6021860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 30557405 - 30557497
Alignment:
Q  265 tatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaa 357  Q
    |||||||| ||||||| ||||||||| | ||| | || ||||||||||  |||||||||||||| |||||| |||| || ||| | |||||||    
T  30557405 tatgtgtaagtttggtcccacttctacaaggactagaattgattctggaggtgtagaattgattctgacatgtttggttactgccgagtagaa 30557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 31362347 - 31362239
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    ||||||||| || | | |||| |||| |||||  || ||||||||| || |||||||| |||||||||    ||||||||  |||||| | |||||||||    
T  31362347 gtgtagaatcgactctaacatgtttggttgctttcatgtagaattgattttgcctccataattgattc----tgaagttagaatttgtagcttttgattc 31362252  T
Q  415 tagaattgatttt 427  Q
    |||||||||||||    
T  31362251 tagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 50571279 - 50571337
Alignment:
Q  371 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttca 429  Q
    |||||||||||| ||||||||||| ||||||| | |||| ||||||||| |||| ||||    
T  50571279 cagaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttca 50571337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 351 - 522
Target Start/End: Complemental strand, 33019266 - 33019097
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 450  Q
    |||| ||||| || |||||| ||||||||||  | |||||| ||  |||||| | ||||| || ||||||||||||||||||||    |||||||| |||    
T  33019266 agtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacata---aatttatagttc 33019170  T
Q  451 aattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 522  Q
    || ||||||||||||||||| ||  |||||||||||| |||||||| |||| || ||||||||||||||||||    
T  33019169 aactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattc 33019097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 372 - 501
Target Start/End: Original strand, 43501121 - 43501245
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgt 471  Q
    ||||||||||| |||||||  || ||||||| | |||||||| ||||||||||| | |||||     || ||||||||||| ||| ||||||||||||||    
T  43501121 agaattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacaca-----aaattataattcaactcagttttacatgaatgt 43501215  T
Q  472 attgaaacacaaatcatttttagtcggaat 501  Q
    ||  |||||||||||| |||||||| ||||    
T  43501216 atacaaacacaaatcacttttagtcagaat 43501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 552 - 681
Target Start/End: Original strand, 43832668 - 43832797
Alignment:
Q  552 aggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaa 651  Q
    |||||||||||||||  ||||||||||||||||  ||||||| || ||  |||||||||||   |||| |||||| |||||| | ||||||||||  |||    
T  43832668 aggaacctttcttttgatatatggaaagaattctcaaaactgagcagatttgaataaacaagagaatgattctaactagaataaagattgatcaacgaaa 43832767  T
Q  652 ttgagaaaagaaaatttcttttgatatctt 681  Q
    |||||||||||| | ||||||  |||||||    
T  43832768 ttgagaaaagaagaattctttcaatatctt 43832797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 433
Target Start/End: Complemental strand, 2002888 - 2002723
Alignment:
Q  268 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 367  Q
    |||||||||||||||| |||| | ||||  |  |||||||||| |  | |||||||||||  ||||||  ||| |||||  | |||||||||| || |||    
T  2002888 gtgtatgtttggttccccttccacaggggttaaagttgattctagaggagtagaattgatgttgacatacttggttgctttctagtagaattgattttgc 2002789  T
Q  368 ctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    |||||||  |||||| |||||||| || ||||||| | |||| |||||| |||||||||| |||||    
T  2002788 ctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 367 - 502
Target Start/End: Complemental strand, 11504155 - 11504024
Alignment:
Q  367 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatg 466  Q
    |||||| ||||||||| ||   |||||| ||||||| | |||||||| |||||||| ||||||||||     || ||||| ||||| |||||||||||||    
T  11504155 cctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttcacacaca---aagttatagttcaactcacttttacatg 11504060  T
Q  467 aatgtattgaaacacaaatcatttttagtcggaatt 502  Q
    |||||||| |||||||||||| ||||| ||| ||||    
T  11504059 aatgtattaaaacacaaatcacttttaatcgaaatt 11504024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 553 - 681
Target Start/End: Complemental strand, 1937201 - 1937073
Alignment:
Q  553 ggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaat 652  Q
    |||||||||||||| |||| | |||| |||| |  ||||||||| ||| |||||||||||   || |||||||| |||||| | |||||||||| |||||    
T  1937201 ggaacctttcttttggtatgttgaaataatttcctaaactgggcagaagtgaataaacaagagaacggttctaactagaataaagattgatcaacaaaat 1937102  T
Q  653 tgagaaaagaaaatttcttttgatatctt 681  Q
    ||||||| ||| | ||||||  |||||||    
T  1937101 tgagaaacgaagagttctttgaatatctt 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 349 - 521
Target Start/End: Original strand, 22535971 - 22536141
Alignment:
Q  349 caagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt--cacacatttataatttata 446  Q
    |||||||||||| || |||||  ||||||||||| ||||||| |||  |||||  | |||||||| ||||||| |||||  |||||||     |||||||    
T  22535971 caagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttgcacacat-----atttata 22536065  T
Q  447 attcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattacttt-aaccaaaatcaatt 521  Q
     || || ||| |||||||| |||||||  |||||||||||| |||||||  ||| |||||| ||||||||||||||    
T  22536066 gttaaactcatttttacataaatgtatccaaacacaaatcacttttagttagaaatactttcaaccaaaatcaatt 22536141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 444 - 522
Target Start/End: Original strand, 9143040 - 9143119
Alignment:
Q  444 ataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 522  Q
    ||||||||| |||| |||||||||||||||| ||||| ||| |||||||||||  |||||| |||||| |||||||||||    
T  9143040 ataattcaactcacatttacatgaatgtattcaaacaaaaaccatttttagtcaaaattacatttaactaaaatcaattc 9143119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 268 - 434
Target Start/End: Original strand, 30503101 - 30503267
Alignment:
Q  268 gtgtatgtttggttccacttctagagggagtcgag-ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatg 366  Q
    ||||||| ||||||||||||||| |||| ||| |  |||||| ||| ||||||||||||||| | |||| || | ||| |  |||| |||| || || ||    
T  30503101 gtgtatgcttggttccacttctaaaggg-gtcaaaattgattttggaagtgtagaattgattctaacatgttcgattgatttcaagaagaaatgattttg 30503199  T
Q  367 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 434  Q
    |||||| ||||||||| ||||||||  | |||| || | ||||||||| |||||||||||| ||||||    
T  30503200 cctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 562 - 681
Target Start/End: Original strand, 39867229 - 39867348
Alignment:
Q  562 cttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaag 661  Q
    ||||| |||||||||||||||||| ||||||| || ||  | |||||||||   |||| |||||| |||||| | ||||||||||  |||||||||||||    
T  39867229 cttttggtatatggaaagaattcccaaaactgagcagattttaataaacaagagaatgattctaactagaataaagattgatcaacgaaattgagaaaag 39867328  T
Q  662 aaaatttcttttgatatctt 681  Q
    || | ||||||  |||||||    
T  39867329 aagaattctttcaatatctt 39867348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 487
Target Start/End: Original strand, 42740968 - 42741084
Alignment:
Q  367 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatg 466  Q
    |||||| ||||||||| |||||||| || ||||||| | |||||||||||||||||||||| ||||   |  ||||||   | ||| ||||||||||||     
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac---tcaaatttactgtccaactcacttttacat- 42741063  T
Q  467 aatgtattgaaacacaaatca 487  Q
    |||||||| ||||||||||||    
T  42741064 aatgtattcaaacacaaatca 42741084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 10644578 - 10644697
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 450  Q
    |||||||||| || |||||||| |||| |||| ||||||||||| ||||||| | |||| ||| ||||||| | ||||| ||||    |||||||| |||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacat---aaatttatagttc 10644674  T
Q  451 aattcacttttacatgaatgtat 473  Q
    || ||||||||| || |||||||    
T  10644675 aactcacttttatataaatgtat 10644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 16518838 - 16518890
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||||||||||    
T  16518838 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcatttt 16518890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 439 - 536
Target Start/End: Complemental strand, 26032060 - 26031962
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattccccccacctcacaa 536  Q
    |||||||| ||||| |||||||||||   ||||||| | |||||||| ||||||||||  ||| |  |||||| ||||||||||| |||||||||||||    
T  26032060 aatttatacttcaactcacttttacacatatgtattcacacacaaatgatttttagtcaaaatcatttttaactaaaatcaattctccccacctcacaa 26031962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 448 - 523
Target Start/End: Original strand, 13912856 - 13912932
Alignment:
Q  448 ttcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatt-actttaaccaaaatcaattcc 523  Q
    ||||| ||| |||||||||| |||||  |||||||||||| |||| ||| ||||| | |||||||||||||||||||    
T  13912856 ttcaactcatttttacatgattgtatccaaacacaaatcactttttgtcagaattaattttaaccaaaatcaattcc 13912932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 680315 - 680270
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaa 484  Q
    |||||| ||||||| ||||||||||||||||||||  |||||||||    
T  680315 aatttagaattcaactcacttttacatgaatgtatgcaaacacaaa 680270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 6074544 - 6074479
Alignment:
Q  458 ttttacatgaatgtattgaaacacaaatcatttttagtcggaattactt-taaccaaaatcaattc 522  Q
    ||||||||||||||||  ||| | |||| |||||||||| |||| |||| ||||||||||||||||    
T  6074544 ttttacatgaatgtatccaaataaaaattatttttagtcagaatgacttctaaccaaaatcaattc 6074479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 372 - 522
Target Start/End: Original strand, 42858104 - 42858252
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgt 471  Q
    ||||||||||  ||||||||||| ||||||  | |||| |||||| ||||||||||||||||     |||||||| ||||| |||||||||||||||| |    
T  42858104 agaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacaca---aatttatagttcaactcacttttacatgaattt 42858200  T
Q  472 attgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattc 522  Q
    ||| ||||||| |||| |||||||| |||| |  ||||||||||||||||||    
T  42858201 attcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaattc 42858252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 374 - 491
Target Start/End: Complemental strand, 6951392 - 6951278
Alignment:
Q  374 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 473  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||| |||||||||  ||||||    ||||||||||||||||||||||||||||||| |||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacata---aatttataattcaattcacttttacatgaatttat 6951296  T
Q  474 tgaaacacaaatcatttt 491  Q
      ||| |||| |||||||    
T  6951295 ccaaatacaagtcatttt 6951278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 369 - 509
Target Start/End: Original strand, 38845436 - 38845574
Alignment:
Q  369 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcac-ttttacatga 467  Q
    |||| ||||||||| |||||||| || ||||||| | ||||||||||||||||||||||||||||     ||| |||| || || |||| ||||||||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacaca---caaatatatagttaaactcactttttacatga 38845532  T
Q  468 atgtattgaaacacaaatcatttttagtcggaattactttaa 509  Q
    || |||  |||||||||||||||||||||  |||||||||||    
T  38845533 atatatccaaacacaaatcatttttagtcataattactttaa 38845574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 374 - 521
Target Start/End: Complemental strand, 18851169 - 18851024
Alignment:
Q  374 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 473  Q
    ||||||||| |||||||| |||||||||| | |||||||| |||||||||||||||||||  |   ||||||| || || |||||||||||||||  |||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacat---atttatagttaaactcacttttacatgaagttat 18851073  T
Q  474 tgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaatt 521  Q
      ||||||||| ||  |||||||  |||||| |||||||||||||||||    
T  18851072 ccaaacacaaaccacatttagtcaaaattacttttaaccaaaatcaatt 18851024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 433
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  275 tttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccaga 374  Q
    ||||| ||||||||||||||||    | |||||| |||  ||||| |||||||| |||||| |||| |||||| | |||||||||  |||||| |  | |    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaa 11648080  T
Q  375 attgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    |||||||| |||||||| || |||||||  ||||||||| || ||||||||||||||||    
T  11648081 attgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 9818723 - 9818785
Alignment:
Q  365 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 427  Q
    |||||||| ||||||||| |||||||| |||||||||| | ||||||||||||||||||||||    
T  9818723 tgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 9818785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 706
Target Start/End: Complemental strand, 16958453 - 16958304
Alignment:
Q  554 gaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaatt 653  Q
    ||||||||||||| |||||  ||||| ||||| ||||  |||| |||||| ||| |||   ||||| |||||| |||||| | |||||||||  ||||||    
T  16958453 gaacctttcttttggtata--gaaagtattcccaaaatcgggctgaaatggatacacacgataatgattctaactagaataaagattgatcagcaaaatt 16958356  T
Q  654 gagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggata 706  Q
    |||||||||| | ||||||  ||||||| |||| | |||||||||||||||||    
T  16958355 gagaaaagaagaattctttgaatatctt-tgttattatcaattgaatgggata 16958304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 374 - 487
Target Start/End: Original strand, 14299328 - 14299434
Alignment:
Q  374 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 473  Q
    ||||||||| ||||||||||| ||||||| | |||| |||||||||||| |||||||||||    |||||||| ||| |||||| |||||||   |||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacat---aaatttatagttcgattcac-tttacat---tgtat 14299420  T
Q  474 tgaaacacaaatca 487  Q
    | ||||||||||||    
T  14299421 tcaaacacaaatca 14299434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 612
Target Start/End: Complemental strand, 19457160 - 19457100
Alignment:
Q  552 aggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaa 612  Q
    ||||| ||||||||| |||||| ||||||||| | |||||||||| |||||||||||||||    
T  19457160 aggaagctttcttttggtatattgaaagaatttccaaaactgggcagaaatgaataaacaa 19457100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 433  Q
    |||||||||| ||||||||| ||||||||||| |||||| | ||  | |||| | ||||||||||| ||||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 1105378 - 1105492
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattga-ttcaacttgaagttatgatttgtcgattttga-t 412  Q
    ||||| |||||||| |||||||||||  || |  |||||||||||| || ||| | || |||||| || |||| ||||||||||||||| | |||||| |    
T  1105378 gtgtataattgattttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgact 1105477  T
Q  413 tctagaattgatttt 427  Q
    |||| ||||||||||    
T  1105478 tctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 18637280 - 18637349
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt--cacacatttata 439  Q
    ||||||||||| |||||||| || |||  || | ||||||||||||||||||||||  ||||||||||||    
T  18637280 agaattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacacacatttata 18637349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 269 - 517
Target Start/End: Complemental strand, 25359765 - 25359520
Alignment:
Q  269 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcc 368  Q
    ||||||||||||||||||| ||||| |    || |||||| |||  || |||||||| || |  ||| |||| |||||| ||| || ||||| || ||||    
T  25359765 tgtatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttctaccatgtttggttgctgtcaaata-aattgattctgcc 25359667  T
Q  369 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaa 468  Q
    |||||||||||||| |||||||||||  |||||| | |||| |||||| ||||||||||||||||  |   ||||||  || || |||||| || |||||    
T  25359666 tccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacacat---atttattgttaaaatcacttctatatgaa 25359570  T
Q  469 tgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatc 517  Q
    |||||  |||||||||||| |||| ||| ||||||  |||||||||||||    
T  25359569 tgtatccaaacacaaatcactttttgtcagaattatttttaaccaaaatc 25359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 552 - 663
Target Start/End: Original strand, 21505640 - 21505751
Alignment:
Q  552 aggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaa 651  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||     |||  |||||  |||||| | | |||||||| ||||    
T  21505640 aggaacctttcttttggtatatggaaagaattcccaaaactgggcagaaatgaataaactgcagaataattctagctagaataaaggttgatcaacaaaa 21505739  T
Q  652 ttgagaaaagaa 663  Q
    ||||||||||||    
T  21505740 ttgagaaaagaa 21505751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 351 - 507
Target Start/End: Original strand, 52364026 - 52364179
Alignment:
Q  351 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 450  Q
    |||||||||  | |||| || ||||||| ||| |||||||| |||||||| | | ||||||||||| |||||||||||| ||||    |||||| | |||    
T  52364026 agtagaattaatcatgcatcgagaattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacat---aaatttacagttc 52364122  T
Q  451 aattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattacttt 507  Q
    || |||||||||||| ||  |||| |||||||||||| ||||| |  ||||||||||    
T  52364123 aactcacttttacataaaattatttaaacacaaatcaattttaattagaattacttt 52364179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 38022329 - 38022451
Alignment:
Q  268 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattg-tttatg 366  Q
    |||||||||||||| |||||||||| |||    |||||||||| | ||||||||||||||| || ||| |||| |||||  |||||||||||| ||| ||    
T  38022329 gtgtatgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgct--caagtagaattgatttttg 38022426  T
Q  367 cctccagaattgattcaacttgaag 391  Q
    |||||| ||||||||| || |||||    
T  38022427 cctccaaaattgattctacctgaag 38022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 507
Target Start/End: Complemental strand, 52141299 - 52141205
Alignment:
Q  410 gattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattacttt 507  Q
    |||||||||||| |||||||||||   |||||| ||| ||||| ||||||||| ||||||||||| |||||||||  | |||||||| ||||||||||    
T  52141299 gattctagaattaattttcacacac--ataatt-atagttcaactcacttttatatgaatgtatttaaacacaaactacttttagtcagaattacttt 52141205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 397 - 484
Target Start/End: Complemental strand, 31708303 - 31708219
Alignment:
Q  397 atttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaa 484  Q
    |||||| | |||||||||||||||||||| | |||||     |||||||||||||| ||||||||||||||||||||  |||||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacaca---aatttataattcaactcacttttacatgaatgtatccaaacacaaa 31708219  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 315 - 430
Target Start/End: Original strand, 54596757 - 54596872
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    ||||| ||||||||||||||| |||| ||| |  |||||||||||| || |||||||| || |||||  | |||||||||  ||||||   |||| |||     
T  54596757 gtgtaaaattgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattt 54596856  T
Q  415 tagaattgattttcac 430  Q
    ||||||||||||||||    
T  54596857 tagaattgattttcac 54596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 439 - 523
Target Start/End: Complemental strand, 46551293 - 46551207
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatca-tttttagtcggaattac-tttaaccaaaatcaattcc 523  Q
    ||||||||  |||| ||||||||| ||||||||||| ||||| |||| | |||| |||||||| ||| |||||||||||||||||||    
T  46551293 aatttatagctcaactcacttttatatgaatgtattcaaacaaaaattacttttaagtcggaagtacttttaaccaaaatcaattcc 46551207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 47356385 - 47356272
Alignment:
Q  321 aattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaat 420  Q
    |||||||||||| || |||| |||||  |||||| ||||| || || ||  ||||| ||||| ||||||||||| ||||| | |  ||||||| ||||||    
T  47356385 aattgattatgatatgtttggttgctatcaagtataattgattttgtctttagaatcgattccacttgaagttaagatttatagtctttgattatagaat 47356286  T
Q  421 tgattttcacacat 434  Q
    ||||||| ||||||    
T  47356285 tgatttttacacat 47356272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 269 - 382
Target Start/End: Complemental strand, 48411004 - 48410891
Alignment:
Q  269 tgtatgtttggttccacttctagagggagtc-gagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 367  Q
    ||||||||||||| ||||| ||||||| ||| || ||||||||   ||||| ||||||||| ||| || |||| |||||  | |||||||||| || |||    
T  48411004 tgtatgtttggttacacttttagaggg-gtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgattttgc 48410906  T
Q  368 ctccagaattgattc 382  Q
    ||||| |||||||||    
T  48410905 ctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 42816523 - 42816441
Alignment:
Q  406 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    |||| |||||||||||||||||||||||     ||||||||||||||||||||| |||||||||||||  ||||||| ||||||||    
T  42816523 ttttaattctagaattgattttcacacaca---aatttataattcaattcacttctacatgaatgtatgcaaacacatatcatttt 42816441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 25156230 - 25156312
Alignment:
Q  406 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 491  Q
    |||| ||||||||||||||||| ||||||    |||| |||| |||| ||||||||| ||||||||||| ||||||||||||||||    
T  25156230 tttttattctagaattgatttttacacata---aattaataaatcaactcacttttatatgaatgtattcaaacacaaatcatttt 25156312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 492
Target Start/End: Original strand, 22195803 - 22195977
Alignment:
Q  315 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 414  Q
    ||||| |||| |||||||||| |||| ||  || | |||||||||| ||||| |  || ||||||||  |||| ||| ||||||||||   |||||||||    
T  22195803 gtgtaaaattaattatgacatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattc 22195902  T
Q  415 tagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcattttt 492  Q
    || ||||||||||||||  |  ||| |||||| || |||||||||||||||  ||||||  ||||||||||| |||||    
T  22195903 taaaattgattttcaca--tgcata-tttatagtttaattcacttttacattcatgtatccaaacacaaatctttttt 22195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 473
Target Start/End: Original strand, 35772235 - 35772352
Alignment:
Q  353 tagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaa 452  Q
    |||||||| || || ||||| |||| |||| |||| || ||| ||||||| | |||||||| ||||||||||||||||| ||    ||||||||||||||    
T  35772235 tagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaat---aaatttataattcaa 35772331  T
Q  453 ttcacttttacatgaatgtat 473  Q
    || ||||||| || |||||||    
T  35772332 tttacttttatataaatgtat 35772352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 41386955 - 41386811
Alignment:
Q  321 aattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaat 420  Q
    |||||||| |||||| |||| |||||  | |||| ||||| ||   ||| |||||||||||| |||||||| || ||||||| | |||| ||||||||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaat 41386856  T
Q  421 tgattttcacacatttataatttataattcaattcacttttacatgaa 468  Q
    |||| || |||||     |||||||||||||| |||||||| ||||||    
T  41386855 tgatatttacaca---caaatttataattcaactcacttttgcatgaa 41386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 1410958 - 1411018
Alignment:
Q  372 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 432  Q
    ||||||||||| | |||||||||| |||||| ||||||| || ||||||||||||||||||    
T  1410958 agaattgattctatttgaagttataatttgtagattttgtttttagaattgattttcacac 1411018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 32295244 - 32295292
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatca 487  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  32295244 aatttataattcaactcacttttacataaatgtattaaaacacaaatca 32295292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 356 - 473
Target Start/End: Original strand, 40491558 - 40491672
Alignment:
Q  356 aattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattc 455  Q
    ||||| || ||||| ||||||||| || ||||||||||| | ||||| | |||||||||||||||||| ||| |||||     |||||| | || || ||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacaca---caaatttaaagtttaactc 40491654  T
Q  456 acttttacatgaatgtat 473  Q
    ||||||||||||||||||    
T  40491655 acttttacatgaatgtat 40491672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 44856948 - 44856843
Alignment:
Q  317 gtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattcta 416  Q
    ||||||||||||||||||| |||| |||||   ||||||||||| || | |||||| ||||||| | |||||||  |||||||| |    ||||||||||    
T  44856948 gtagaattgattatgacatatttggttgct---aagtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattcta 44856854  T
Q  417 gaattgatttt 427  Q
    |||||||||||    
T  44856853 gaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 40422765 - 40422828
Alignment:
Q  349 caagtagaattgtttatgcctccagaattgattc-aacttgaagttatgatttgtcgattttga 411  Q
    |||||||||||| || |||||| ||||||||||| |||||||||||| ||||||| | ||||||    
T  40422765 caagtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 9480634 - 9480572
Alignment:
Q  439 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaat 501  Q
    ||||||||||| || ||||||||| ||||||||||| || ||||||| |  ||||||||||||    
T  9480634 aatttataatttaactcacttttaaatgaatgtattcaatcacaaattacctttagtcggaat 9480572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 22198192 - 22198246
Alignment:
Q  488 tttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaa 541  Q
    ||||||||| |||||||||| |||||||||||||||  |||||| ||||||||||    
T  22198192 tttttagtcagaattacttttaaccaaaatcaattcttcccaccgcacaatcaaa 22198246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 22239629 - 22239575
Alignment:
Q  488 tttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaa 541  Q
    ||||||||| |||||||||| |||||||||||||||  |||||| ||||||||||    
T  22239629 tttttagtcagaattacttttaaccaaaatcaattcttcccaccgcacaatcaaa 22239575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 27571853 - 27571974
Alignment:
Q  367 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatg 466  Q
    |||| ||||||||||| |||||||||||  | |||  | |||||||||||||||||||||| ||||   |  | ||||| |||||| |||| |||||||     
T  27571853 cctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacac---tcaagtttattattcaactcacatttacata 27571949  T
Q  467 aatgtattgaaacacaaatcatttt 491  Q
    |||||||  || || ||||||||||    
T  27571950 aatgtatccaaccataaatcatttt 27571974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 469
Target Start/End: Complemental strand, 220694 - 220597
Alignment:
Q  371 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaat 469  Q
    |||||||||||| |||||||| |||| ||||  | |||||||||||||||||||||| | | |   | |||||||| ||||||||||||||| ||||||    
T  220694 cagaattgattctacttgaagctatgttttgcagtttttgattctagaattgatttttagata-caaaaatttatagttcaattcacttttatatgaat 220597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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