View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_12 (Length: 541)
Name: NF12039_low_12
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 74 - 525
Target Start/End: Original strand, 34518422 - 34518871
Alignment:
| Q |
74 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaattttt |
173 |
Q |
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||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34518422 |
tttgtttcagcaaacatttgtaaaggatttggtttgaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaattttt |
34518521 |
T |
|
| Q |
174 |
aacctcacttttccttcatcatatccaaattaacaacaaactttcagggtccattcaatccatactcaggaggatatcatttctaagctaaattgaagac |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
34518522 |
aacctcacttttccttcatcatatccaaattaacaacaaactttcagggtccatccaatccatactcaggaggacatcatttctaaggtaaattgaagac |
34518621 |
T |
|
| Q |
274 |
ttgacatataatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacatatagtaatcacacacatacataaatattat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
34518622 |
ttgacatataatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaac--atagtaatcacacacatgcataaatattat |
34518719 |
T |
|
| Q |
374 |
taaaatcaaatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcatgcgaatatcgaaaacaggaatatcttgtgac |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
34518720 |
taaaatcaaatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaactttattcatcatgcgaatatcaaaaacaggaatatcttgtgac |
34518819 |
T |
|
| Q |
474 |
acctcagtaggtgttgttgaagatgaagctccaatgttgttgtcctctgtgc |
525 |
Q |
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| T |
34518820 |
acctcagtaggtgttgttgaagatgaagctccaatgttgttgtcctctgtgc |
34518871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 74 - 525
Target Start/End: Original strand, 27633601 - 27634053
Alignment:
| Q |
74 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaattttt |
173 |
Q |
| |
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||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
27633601 |
tttgtttcagcaaacatttgtaaaggatttggtttaaaggttttcataataatcccattgagttttaaaaactccataacaatgaaaaggtttaattttt |
27633700 |
T |
|
| Q |
174 |
aacctcacttttccttcatcatatccaaattaacaacaaactttcagggtccatt---caatccatactcaggaggatatcatttctaagctaaattgaa |
270 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
27633701 |
aacctcacttttccttcattatatccaaattaacaacaaactttcagggtccattattcaatccatactcaggaggacatcatttctaaggtaaattgaa |
27633800 |
T |
|
| Q |
271 |
gacttgacatataatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacatatagtaatcacacacatacataaatat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
27633801 |
gacttgacatataatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacata--gtaatcacacacattcataaatat |
27633898 |
T |
|
| Q |
371 |
tattaaaatcaaatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcatgcgaatatcgaaaacaggaatatcttgt |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27633899 |
tattaaaatcaaatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacctcattcatcatgcgaatatcgaaaacaggaatatcttgt |
27633998 |
T |
|
| Q |
471 |
gacacctcagtaggtgttgttgaagatgaagctccaatgttgttgtcctctgtgc |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
27633999 |
gacacctcagtaggtgttgttgaagatgaagctccaatgttgttttcctctgtgc |
27634053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 34527459 - 34527555
Alignment:
| Q |
84 |
caaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaacgaaaaggtttaatttttaacctca |
180 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34527459 |
caaacatttgtaaaggatttggtttaaaggttttcatgataatcctattcagttttaaaaactccataacaaagaaaatgtttaatttttaacctca |
34527555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 34527582 - 34527656
Alignment:
| Q |
259 |
agctaaattgaagacttgacatataatcaatctattctataaaatacatccaagaagaacaaaattgatatatca |
333 |
Q |
| |
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|||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
34527582 |
agctaagtttaagacttgacatataatcaatctcttcaataaaatacatccaagaagaataaaattgatatatca |
34527656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 442
Target Start/End: Original strand, 34527707 - 34527799
Alignment:
| Q |
351 |
tcacacacatacataaatattattaaaatcaaat-ataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcat |
442 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| |||||| |||| |
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|
| T |
34527707 |
tcacacacataaagaaagattattaaaatcaaattaaaaaaaacaacctttctcatctccagaaatactgtgatcatcaacctcattcgtcat |
34527799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 27618062 - 27618143
Alignment:
| Q |
74 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaa |
155 |
Q |
| |
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||||||||| |||| ||||| |||| ||||| |||| ||| |||||| |||||| | ||||||| |||||||||||||||| |
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| T |
27618062 |
tttgtttcagcaaagatttgaaaagaatttggtttagaggctttcatgataatcttaatcagtttaaaaaactccataacaa |
27618143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 34506858 - 34506939
Alignment:
| Q |
74 |
tttgtttcaacaaatatttgtaaaggatttgctttaaaggttttcataataatcccattcagttttaaaaactccataacaa |
155 |
Q |
| |
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|||||||||||||| ||||| |||| |||| |||| ||| |||||| |||||| | ||||||| |||||||||||||||| |
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| T |
34506858 |
tttgtttcaacaaagatttgaaaagagtttggtttagaggctttcatgataatcttaatcagtttaaaaaactccataacaa |
34506939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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