View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_13 (Length: 507)
Name: NF12039_low_13
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 138 - 493
Target Start/End: Complemental strand, 51225404 - 51225048
Alignment:
| Q |
138 |
aaagaattgttggctgcagctttaaggaagggatagtgataagcaagtttgaggcatgaatcatgataagctttaggtgtttagacactt-acatcacta |
236 |
Q |
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| T |
51225404 |
aaagaattgtttgctgcagctttaaggaagggatagtgataagcaagtttgaggcatgaatcatgataagcttcaggtgtttagacactttacatcacta |
51225305 |
T |
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| Q |
237 |
atcccacaataatgataagaaggagtaaaatacacttggtttcctaataacaacaaacacaatatcctaaaagagtggttatgaaagtgtgaacagattt |
336 |
Q |
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| T |
51225304 |
atcccacaataatgataagaaggagtaaaatacacttggtttcctaataacaacaaacacaatatcctaaaagagtggttatgaaagtgtgaacagattt |
51225205 |
T |
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| Q |
337 |
gtgttatggtgttgggatatggaacagtgagtagccggctacccttgggtttcttttttaatatataataatcatgtataactataactaaaaagtaatt |
436 |
Q |
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| T |
51225204 |
gtgttatggtgttgggatatggaacagtgagtagccgcctacccttgggtttcttttttaatatataataatcatgtataactataactaaaaagtaatt |
51225105 |
T |
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| Q |
437 |
atctccgtttaaccatgattaattatcttaacaatatgttggatacataagaaaact |
493 |
Q |
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| T |
51225104 |
atctccgtttaatcatgattaatcctcttaacaatatgttggatacataagaaaact |
51225048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 51225733 - 51225592
Alignment:
| Q |
1 |
atgaacgtaagcatagccaactcagacaaaatatataaaaggtgtagtaataaaataaagataggaaattggtannnnnnnnaaaaactgtccagtaatt |
100 |
Q |
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| T |
51225733 |
atgaacgtaagcatagccaactcagacaaaatatataaaaggtgtagtaataaaataaagataggaaattggta-tttttttaaaaactgtccagtaatt |
51225635 |
T |
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| Q |
101 |
ggtagtattattaatcacataaataatgatttaagtaaaagaa |
143 |
Q |
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| T |
51225634 |
ggtagtattattaatcacataaataatgatttaagtaagagaa |
51225592 |
T |
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