View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12039_low_14 (Length: 481)
Name: NF12039_low_14
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_14 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 481
Target Start/End: Complemental strand, 39625484 - 39624975
Alignment:
| Q |
4 |
agtgagatgaagtaaacgaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatg |
103 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625484 |
agtgagaggaagtaaacaaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatg |
39625385 |
T |
|
| Q |
104 |
cgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcaaccttcttctatcttaggacgagaaaaagccattattgttaact |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625384 |
cgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttcttctatcttaggacgagaaaaagccattattgttaact |
39625285 |
T |
|
| Q |
204 |
tagaacacattagagcgatt----------atgaagtgcttatgattaattcaattgacccttcctttattcgctttcttcaagatcttcaaaagcgtgt |
293 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625284 |
tagaacacattagagcgattatcacttcgaatgaagtgcttatgattaattcaattgaccctttctttattcgctttcttcaagatcttcaaaagcgtgt |
39625185 |
T |
|
| Q |
294 |
tcttctttctaataatattcaagtgcccatgcgggggagcgatgacgttgatagtcattgtgaagtcaaaccttt---------------------ggtg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39625184 |
tcttctttctaataatattcaagtgcccatgcgggggagcgatgacgttgatagtcattgtgaagtcaaacctttgttggaggagttgttgccatcggtg |
39625085 |
T |
|
| Q |
373 |
cagagtcctactcattttccaaataatgaatcaattggcgtagcaggtgcgtc-gctcctaagcagcttccgtttgagttcaaagctcttgagtcttgta |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625084 |
cagagtcctactcattttccaaataatgaatcaattggcgtagcaggtgtgtcggctcctaagcagcttccgtttgagttcaaagctcttgagtcttgta |
39624985 |
T |
|
| Q |
472 |
ttgaatctgc |
481 |
Q |
| |
|
|||||||||| |
|
|
| T |
39624984 |
ttgaatctgc |
39624975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 481
Target Start/End: Complemental strand, 39635034 - 39634525
Alignment:
| Q |
4 |
agtgagatgaagtaaacgaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatg |
103 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39635034 |
agtgagaggaagtaaacaaaagggtattgcaaagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatg |
39634935 |
T |
|
| Q |
104 |
cgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcaaccttcttctatcttaggacgagaaaaagccattattgttaact |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39634934 |
cgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttcttctatcttaggacgagaaaaagccattattgttaact |
39634835 |
T |
|
| Q |
204 |
tagaacacattagagcgatt----------atgaagtgcttatgattaattcaattgacccttcctttattcgctttcttcaagatcttcaaaagcgtgt |
293 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39634834 |
tagaacacattagagcgattatcacttcgaatgaagtgcttatgattaattcaattgaccctttctttattcgctttcttcaagatcttcaaaagcgtgt |
39634735 |
T |
|
| Q |
294 |
tcttctttctaataatattcaagtgcccatgcgggggagcgatgacgttgatagtcattgtgaagtcaaaccttt---------------------ggtg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39634734 |
tcttctttctaataatattcaagtgcccatgcgggggagcgatgacgttgatagtcattgtgaagtcaaacctttgttggaggagttgttgccatcggtg |
39634635 |
T |
|
| Q |
373 |
cagagtcctactcattttccaaataatgaatcaattggcgtagcaggtgcgtc-gctcctaagcagcttccgtttgagttcaaagctcttgagtcttgta |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39634634 |
cagagtcctactcattttccaaataatgaatcaattggcgtagcaggtgtgtcggctcctaagcagcttccgtttgagttcaaagctcttgagtcttgta |
39634535 |
T |
|
| Q |
472 |
ttgaatctgc |
481 |
Q |
| |
|
|||||||||| |
|
|
| T |
39634534 |
ttgaatctgc |
39634525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 35 - 285
Target Start/End: Complemental strand, 40276733 - 40276473
Alignment:
| Q |
35 |
aagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgacctta |
134 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||| |
|
|
| T |
40276733 |
aagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgacctta |
40276634 |
T |
|
| Q |
135 |
gagtctttgatacaaagctttctcaaccttcttctatcttaggacgagaaaaagccattattgttaacttagaacacattagagcgatt----------a |
224 |
Q |
| |
|
||| ||||| |||| || ||| | ||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| ||| | |
|
|
| T |
40276633 |
gagctcttgatccaaaactctctaacccttcttctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaa |
40276534 |
T |
|
| Q |
225 |
tgaagtgcttatgattaattcaattgacccttcctttattcgctttcttcaagatcttcaa |
285 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||| |||| || ||||||||||||||| |
|
|
| T |
40276533 |
tgaagtgcttatgattaattccacaaaccctttctttcttcgtttccttcaagatcttcaa |
40276473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 479
Target Start/End: Complemental strand, 40276325 - 40276272
Alignment:
| Q |
426 |
gctcctaagcagcttccgtttgagttcaaagctcttgagtcttgtattgaatct |
479 |
Q |
| |
|
||||||||||| | || |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40276325 |
gctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatct |
40276272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University