View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_16 (Length: 398)
Name: NF12039_low_16
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 21194959 - 21194574
Alignment:
| Q |
7 |
tcaatgtgagatcattataatcctaaagaatgactggaaataagttctccatctatccaagaggataggnnnnnnnnnnnnnctacccattcccaacaca |
106 |
Q |
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| T |
21194959 |
tcaatgtgagatcattataatcctaaagaatgactggaaataagttctccatctatccaagaggataggaaaaataaaaaaactacccattcccaacaca |
21194860 |
T |
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| Q |
107 |
gtcttaaattgtggttgcaaccgcagttgcagttatgctgttaacctttatagtaaaaataccgacacatacggccaaaattttagttgcgatgccctta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
21194859 |
gtcttaaattgtggttgcaaccgcagttgcagttatgctgttaacctttatagtaaaaataccgacacatacagccaaaattttagttgcgatgccaata |
21194760 |
T |
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| Q |
207 |
aagagagctcagaaatctttatacggctgccaaaattgcagtcgcggactgcaatttaaaaccatgcttaatattgcaagtgaagtctttaaactacgct |
306 |
Q |
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| T |
21194759 |
aagagagctcagaaatctttatacggctgccaaaattgcggtcgcggactgcaatttaaaaccatgcttaatattgcaagtgaagtctttaaattatgat |
21194660 |
T |
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| Q |
307 |
ttattgcaattctggtctccacttgtaccattggtcgtaccattattgtttggatttgaattacttccaatgatggaagttatggc |
392 |
Q |
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| T |
21194659 |
ttattgcaattctggtctccacttgtaccattggtagtaccattattatttggatttgaattacttccaacgatggaagttatggc |
21194574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 11283739 - 11283780
Alignment:
| Q |
235 |
gccaaaattgcagtcgcggactgcaatttaaaaccatgctta |
276 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||| |
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| T |
11283739 |
gccaaaattgcagttgcgggctgcaatttaaaaccatgctta |
11283780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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