View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_17 (Length: 388)
Name: NF12039_low_17
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 226 - 361
Target Start/End: Complemental strand, 30778176 - 30778041
Alignment:
| Q |
226 |
caaactaacaaattagagtttgacatcaatttttgtaaagatgtttaatattttagaaagaagctgttagtcctatgtttcgtaagaaatcaacttttct |
325 |
Q |
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| T |
30778176 |
caaactaacaaattagagtttgacatcaatttttgtaaagatgtttaatattttagaaagaagctgttagtcctatgtttcgtaagaaatcaacttttct |
30778077 |
T |
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| Q |
326 |
tatcgtacgaagtaagaacacaccacttttattttt |
361 |
Q |
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| T |
30778076 |
tatcgtacgaagtaagaacacaccactttttttttt |
30778041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 30778391 - 30778234
Alignment:
| Q |
1 |
atcattggtggacaaatctcattgagtattttaccatgattcctagttagtgatttccattttttattaattagtcgtggtataggttatttgcttgttg |
100 |
Q |
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| T |
30778391 |
atcatcggtggacaaatctcattgagtgttttaccatgattcctagttagtgatttccattttttattaattagtcgtggtataggttatttgtttgctg |
30778292 |
T |
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| Q |
101 |
tctgtaactcttactgaatcttaacctaacacttcttgtgcggatgtagaactccgtttgttaatata |
168 |
Q |
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| T |
30778291 |
tctgtaactcttagt----------ctaacacttcttgtgcggacgtagaactccgtttgttaatata |
30778234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 42603272 - 42603318
Alignment:
| Q |
6 |
tggtggacaaatctcattgagtattttaccatgattcctagttagtg |
52 |
Q |
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| T |
42603272 |
tggttgacaaatctcattgagtgttttaccatgcttcttagttagtg |
42603318 |
T |
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