View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_18 (Length: 386)
Name: NF12039_low_18
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 28399496 - 28399792
Alignment:
| Q |
31 |
tctagaatttaagaatgagagaagagacaaaaatggaaagttcaaagacaatacaccacatctcttattcaaaattataagatattgataacgtaaatca |
130 |
Q |
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| T |
28399496 |
tctaggatttgagaatgagagaagagacaaaaatggagagtttaaagacaatacaccacatctcttattcaaaattataagatattgataacgtaaatca |
28399595 |
T |
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| Q |
131 |
ccttatatccaatatttctaacatttttatagtgaatgtggggattatagtttacatttaaataacaacaatataattgttaaagttcaacgaattgtca |
230 |
Q |
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| T |
28399596 |
ccttatat------------acatttttatagtgaatgtggggattatagtttacatttaaataacaacaatataattgttaaagttcaacgaattgtca |
28399683 |
T |
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| Q |
231 |
aacgccttttaagaaaacaaaagaacaaattgtcaaacgtaaatttatgagcacnnnnnnncactaaagtactactattaaataattcatacatcactca |
330 |
Q |
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| T |
28399684 |
aacgcctttcaagaaaacaaaagatcaaattgtcaaacgtaaatttatgagcactttttttaactaaag------tattaaataattcatacatcactca |
28399777 |
T |
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