View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_2 (Length: 811)
Name: NF12039_low_2
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 222 - 793
Target Start/End: Complemental strand, 56165182 - 56164608
Alignment:
| Q |
222 |
atccacttcttacccttaaaattacaaacaaaacattagaatccataccgggttggttttaatatttacatagacaaaatattacaaatcgaacttagtt |
321 |
Q |
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| T |
56165182 |
atccacttcttacccttaaaattacaaacaaaacattagaaaccataccgggttggttttaatatttacatagacaaaatattacaaatcgaacttagtt |
56165083 |
T |
|
| Q |
322 |
catgccatatttagatgcaaaatctctaccctagaaagaaagtagagagaaatatattgacttggaatacttgttctcatcaagttgggtgtttctggat |
421 |
Q |
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| T |
56165082 |
catgccatatttagacgcaaaatctctaccctagaaagaaagtagagagaaatatattgacttggaatacttgttctcatcaagttgggtgtttctggat |
56164983 |
T |
|
| Q |
422 |
taagcttcctcaaataaaacgcagcaatctttgttcgcaattcctctataacgggacaacctaagaaaaacttggtaatagttgcttgataactgaacct |
521 |
Q |
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| T |
56164982 |
taagcttcctcaaataaaacgcagcaatctttgttcgcaattcctctataacgggacaacctaagaaaaacttggtaatagttgcttgataactgaacct |
56164883 |
T |
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| Q |
522 |
cataatatctatacagagaactttgagtaaaggaagatctacttggtaattgtcatctttcacaaacaggttttt---cagtttgagaacagtgagtgtc |
618 |
Q |
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| T |
56164882 |
cataatatctatacagagaactttgagtaaaggaagatctacttggtaattgtcatctttcacaaacaggtttttcaacaatttgagaacagtgagtgtc |
56164783 |
T |
|
| Q |
619 |
ttgcaactaaaaatgctactggttaatccattaacatcctccaacctgtcaatgtctaggttttcaattcctctttgtattgctgcattaataaatctgt |
718 |
Q |
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| T |
56164782 |
ttgcaactaaaaatgctactggttaatccattaacatcctccaacatgtcaatgtctaggttttcaattcctctttgtattgctgcattaataaatctgt |
56164683 |
T |
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| Q |
719 |
tgatattgttgatgctgtattctttgccaaatttgaggcaaaatgatcgtattggcagcgtgatttctcgtgata |
793 |
Q |
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| T |
56164682 |
tgatatcgttgatgctgtattctttgccaaatttgaggcaaagtgatcgtattggcagcgtgatttctcgtgata |
56164608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 552 - 695
Target Start/End: Complemental strand, 44253562 - 44253419
Alignment:
| Q |
552 |
aggaagatctacttggtaattgtcatctttcacaaacaggtttttcagtttgagaacagtgagtgtcttgcaactaaaaatgctactggttaatccatta |
651 |
Q |
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| T |
44253562 |
aggaagatctatttgacaattgtcgtctctcatcgataggtttttcaatttgaggacagtgagtgtcttgcaactgaaaatgctatctgttaatccatta |
44253463 |
T |
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| Q |
652 |
acatcctccaacctgtcaatgtctaggttttcaattcctctttg |
695 |
Q |
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| T |
44253462 |
acattctccaacatgtcaatgtctagttcttcgattcctctttg |
44253419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 679 - 779
Target Start/End: Complemental strand, 44258900 - 44258805
Alignment:
| Q |
679 |
ttttcaattcctctttgtattgctgcattaataaatctgttgatattgttgatgctgtattctttgccaaatttgaggcaaaatgatcgtattggcagcg |
778 |
Q |
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| T |
44258900 |
ttttccattcctctttgtattgctgcattaatgaatctgttca-----tcgatgtcgtattcattgccaaatttgaggcggagtgatcgtattggcagcg |
44258806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 53984925 - 53985024
Alignment:
| Q |
131 |
taaattaaatcattaaattatcctaaacatatgcaatacctgattaatggtaagatgttgtagattgggagtgtgttgaagcactcctagcatccacttc |
230 |
Q |
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| T |
53984925 |
taaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc |
53985024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 53971218 - 53971315
Alignment:
| Q |
131 |
taaattaaatcattaaattatcctaaacata-tgcaatacctgattaatggtaagatgttgtagattgggagtgtgttgaagcactcctagcatccac |
227 |
Q |
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| T |
53971218 |
taaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactatgttagagcacgtctagcatccac |
53971315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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