View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_21 (Length: 380)
Name: NF12039_low_21
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 17782118 - 17782469
Alignment:
| Q |
17 |
agttttgaatgaaaagagacaccaattatgaataaaaagatttttcttaccagctaaagtaagagagatagaaattgaatgtacgtatcagtggacgtgg |
116 |
Q |
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| T |
17782118 |
agttttgaatgaaaagagacaccaattatgaataaaaagatttttcttaccacctaaagtaagagagatagaaattgaatgtacgtatcagtggacgtgg |
17782217 |
T |
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| Q |
117 |
ctttaagataatccaaaatataacagagtggtgctataaaagagtgctactgcatgttcattatgatatgtaacgtagacatatattca--nnnnnnnct |
214 |
Q |
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| T |
17782218 |
ctttaagataatccaaaatataaaagagtgttgctataaaagagtgctagtgcatgttcattatgatatgtaacgtagacatatattcatttttttttct |
17782317 |
T |
|
| Q |
215 |
atagttcatcattagcaatgtttacaattggattattttcaacttgtaaatgttttggatgcgcacagaatgtgttgtgctgacatagcttgaaactgtt |
314 |
Q |
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| T |
17782318 |
atagttcatcattagcaatgtttacaattggattattatcaacttgtaaatgttttggatgcgcacaaaatgtgttgtgctgacatagcttgaaactgtt |
17782417 |
T |
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| Q |
315 |
ttggattctttgaagatatattcaagttgttgccactgttattgtgatatcc |
366 |
Q |
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| T |
17782418 |
ttggattctttgaagatatattcaagttgttgccactgttattgtgatatcc |
17782469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 42539248 - 42539291
Alignment:
| Q |
18 |
gttttgaatgaaaagagacaccaattatgaataaaaagattttt |
61 |
Q |
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| T |
42539248 |
gttttgaatgaaaagagacaccaattatgaataaaaagagtttt |
42539291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 42539287 - 42539322
Alignment:
| Q |
266 |
gttttggatgcgcacagaatgtgttgtgctgacatag |
302 |
Q |
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| T |
42539287 |
gttttggatgcgcacagaatgt-ttgtgctgacatag |
42539322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 1330305 - 1330262
Alignment:
| Q |
18 |
gttttgaatgaaaagagacaccaattatgaataaaaagattttt |
61 |
Q |
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| T |
1330305 |
gttttgaatgaaaagagacaccaattatgaataaaaagagtttt |
1330262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 1330266 - 1330231
Alignment:
| Q |
266 |
gttttggatgcgcacagaatgtgttgtgctgacatag |
302 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
1330266 |
gttttggatgcgcacagaatgt-ttgtgctgacatag |
1330231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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