View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_24 (Length: 362)
Name: NF12039_low_24
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 51756381 - 51756647
Alignment:
| Q |
1 |
tctcctcattcatgctctttggtactcaaatttgtaacgcaaagtgttgatatagagcaaccaattaattctccgtatattttttctgtatctctttttg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51756381 |
tctcctcattcatgctctttggctctcaaatttgtaacgcaaagtgttgatatagagcaaccaattaattctccgtacattttttctgtatctctttttg |
51756480 |
T |
|
| Q |
101 |
tcaatcatgtatataaaattaatattccatattcaagtatcagaaaataaattaagtgtcaaagttggtaatgaattgaagagtgaaatgaaattgtgtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756481 |
tcaatcatgtatataaaattaatattccatattcaagtatcagaaaataaattaagtgtcaaagttggtaatgaattgaagagtgaaatgaaattgtgtt |
51756580 |
T |
|
| Q |
201 |
gtgctat----gtagtagataaaccactgataatctcaaatgtccaggagatatagatgtgttcatt |
263 |
Q |
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||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
51756581 |
gtgctatgtacgtaatagataaaccactgaatatctcaaatgttcaggagatatagatgtgttcatt |
51756647 |
T |
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