View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_26 (Length: 332)
Name: NF12039_low_26
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 63 - 314
Target Start/End: Original strand, 32800817 - 32801073
Alignment:
| Q |
63 |
tatattacataattcaaagtcaaacactaaaatatggttgataagttagcatactcattatagttggaaagaaacagaaatcccagaggtgattcttatt |
162 |
Q |
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| T |
32800817 |
tatattacataattcaaagtcaaacactaaaatatggttgataagttagcatactcattatagttgaaaagaaacagaaatcccagaggtgattcttatt |
32800916 |
T |
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| Q |
163 |
tcatattttatttcactaccagaaaaagttgaaataacaacaaaatatggatacagaaaaagtaaaattggtaactaa-----acgtcgataacacttag |
257 |
Q |
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| T |
32800917 |
tcatattttatttcattaccagaaaaagttgaaataacaacaaaatatggatacagaaaaagtaaaattggtaactaaacttgacgtcgataacacttag |
32801016 |
T |
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| Q |
258 |
cgacaaaattagagacgagttttgcattttccgtctctaaatttttatagctatttc |
314 |
Q |
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| T |
32801017 |
cgacaaaattagagacgagttttgcattttccgtctctaaatttttatagctatttc |
32801073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32800780 - 32800817
Alignment:
| Q |
1 |
tccacttttgatttaggggtgaaactctttcaaacctt |
38 |
Q |
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| T |
32800780 |
tccacttttgatttaggggtgaaactctttcaaacctt |
32800817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 43005727 - 43005759
Alignment:
| Q |
175 |
tcactaccagaaaaagttgaaataacaacaaaa |
207 |
Q |
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| T |
43005727 |
tcactaccacaaaaagttgaaataacaacaaaa |
43005759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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