View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12039_low_3 (Length: 684)

Name: NF12039_low_3
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12039_low_3
NF12039_low_3
[»] chr8 (5 HSPs)
chr8 (1-393)||(29136764-29137156)
chr8 (537-668)||(29136513-29136644)
chr8 (99-272)||(28609937-28610110)
chr8 (203-292)||(30044590-30044678)
chr8 (112-164)||(31562919-31562971)
[»] chr2 (7 HSPs)
chr2 (193-272)||(33577151-33577230)
chr2 (230-313)||(4504591-4504674)
chr2 (101-294)||(36292567-36292759)
chr2 (335-387)||(3970760-3970812)
chr2 (220-288)||(37557279-37557347)
chr2 (252-294)||(37539173-37539215)
chr2 (113-158)||(3970760-3970805)
[»] chr4 (5 HSPs)
chr4 (204-294)||(13311683-13311773)
chr4 (213-294)||(12908485-12908566)
chr4 (204-278)||(13309788-13309863)
chr4 (343-387)||(25285250-25285294)
chr4 (204-272)||(45512971-45513039)
[»] chr6 (1 HSPs)
chr6 (186-313)||(27891329-27891457)
[»] chr5 (6 HSPs)
chr5 (174-246)||(30526022-30526094)
chr5 (174-246)||(30566362-30566434)
chr5 (348-387)||(30526176-30526215)
chr5 (348-387)||(30566516-30566555)
chr5 (99-131)||(30526197-30526229)
chr5 (99-131)||(30566537-30566569)
[»] chr7 (3 HSPs)
chr7 (204-313)||(5008556-5008665)
chr7 (193-310)||(48493255-48493372)
chr7 (99-131)||(5008717-5008749)
[»] chr3 (2 HSPs)
chr3 (332-387)||(7926520-7926575)
chr3 (322-393)||(7926714-7926784)
[»] chr1 (3 HSPs)
chr1 (208-294)||(15407262-15407348)
chr1 (205-311)||(43111511-43111617)
chr1 (99-224)||(33412301-33412426)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 29137156 - 29136764
Alignment:
Q  1 agctaaatcctataatcctaattctgtcccaatcgaaaacgggggtaaaatataaaagagtagtgttatttaacaactaaaatttgactacttcggttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  29137156 agctaaatcctataatcctaattctgtcccaatcgaaaacgggggtaaaatataaaacagcagtgttatttaacaactaaaatttgactacttcggttac 29137057  T
Q  101 aactttttaagtggttaacacagttcaaatatattattaattatgttctgtatatggtaaattgatacacgaagtgtcaaaacttattaacaaccaatgt 200  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29137056 aactttttaagtggttaacgcagttcaaatatattattgattatgttctgtatatggtaaattgatacacgaagtgtaaaaacttattaacaaccaatgt 29136957  T
Q  201 aacttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatcatgtata 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||  ||||    
T  29136956 aacttcattaaacacgaatttggatgtggttaaccataattttcagatgttcaactacatgtagatttgaacaccttcaaattgtggttaatcacatata 29136857  T
Q  301 aatttgtggttaacaaaatttgacacctgtaatattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaaccgtttaa 393  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136856 aatttgtggttaaaaaaatttgacacctgtaatattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaaccgtttaa 29136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 537 - 668
Target Start/End: Complemental strand, 29136644 - 29136513
Alignment:
Q  537 attgagaaccagcataaaagaacatgcagtgtataattaccatcaatgctttaaggtgaagttatatgagatcaataatactaaaacttgaaattcaatt 636  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136644 attgagaaccagcataaaagaacatgcagtgtataattgccatcaatgctttaaggtgaagttatatgagatcaataatactaaaacttgaaattcaatt 29136545  T
Q  637 gagtcagataattagaataaagaaacacaaat 668  Q
    ||||||||||||||||||||||||||||||||    
T  29136544 gagtcagataattagaataaagaaacacaaat 29136513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 28610110 - 28609937
Alignment:
Q  99 acaactttttaagtggttaacacagttcaaatatattattaattatgttctgtatatggtaaattgatacacgaagtgtcaaaacttattaacaaccaat 198  Q
    ||||||||||||||||||||  |||||||||||  |  |||||||||||  ||| || || ||| |||| ||||  |||| ||| | |||||| || |||    
T  28610110 acaactttttaagtggttaagtcagttcaaataggtggttaattatgtttagtagatagtcaatggatatacgatatgtctaaagtcattaaccactaat 28610011  T
Q  199 gtaacttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaac 272  Q
    || |||||||||| ||| ||| |||||| |||||||||||||  | || ||||||||| |||||||||||||||    
T  28610010 gttacttcattaatcacaaatatggatggggttaaccataatatttaggtgttcaactgcatgtagatttgaac 28609937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 30044590 - 30044678
Alignment:
Q  203 cttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaat 292  Q
    ||||||||| || ||||| ||| | ||||||| |||||| | |||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  30044590 cttcattaaccatgaattaggaaggggttaactataatttt-agatgttcaactacatgtagatttgaacacctcaaaattgaggttaat 30044678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 31562971 - 31562919
Alignment:
Q  112 tggttaacacagttcaaatatattattaattatgttctgtatatggtaaattg 164  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||| ||||| |||||    
T  31562971 tggttaacacagttcaactatatgattcattatgttcagtagatggttaattg 31562919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 33577151 - 33577230
Alignment:
Q  193 accaatgtaacttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaac 272  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  33577151 accaatgtaacttcattaaccacaaatttgaatgtggttaaccattattttcagatgttcaactccatgtagatttgaac 33577230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 4504674 - 4504591
Alignment:
Q  230 ttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatcatgtataaatttgtggttaa 313  Q
    |||||||||||| ||| |||||||||||||||||||||||||| |||||||  |||| |||| || || || ||||||||||||    
T  4504674 ttaaccataattttcaaatgttcaactacatgtagatttgaactccttaaacctgtgattaaccacgtttacatttgtggttaa 4504591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 294
Target Start/End: Original strand, 36292567 - 36292759
Alignment:
Q  101 aactttttaagtggttaacacagttcaaatatattattaattatgttctgtatatggtaaattgatacacgaagtgtcaaaacttattaacaaccaatgt 200  Q
    ||||||||||||| |||| ||  ||||||||  |  ||||||| |||| ||| ||||| ||| |||| || | ||||||||||| |||||| | | | ||    
T  36292567 aactttttaagtgattaatacccttcaaataggtagttaattacgttcagtagatggttaatggatatacta-gtgtcaaaactcattaaccatcgacgt 36292665  T
Q  201 aacttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatca 294  Q
    ||||||||||| ||| ||||| ||  ||| ||||| | ||| | || ||||||||||||| ||||||| |||  || |||||||||||||||||    
T  36292666 aacttcattaaccacaaattttgacatggctaaccgtcatttttagttgttcaactacatctagatttaaacagctgaaaattgtggttaatca 36292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 3970812 - 3970760
Alignment:
Q  335 ttcattagccatatactgaacgtaattaaccacttatttgaattgtgttaacc 387  Q
    ||||||| ||||||||||||| |||||||| || |||||||| ||||||||||    
T  3970812 ttcattaaccatatactgaacataattaactacatatttgaactgtgttaacc 3970760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 37557347 - 37557279
Alignment:
Q  220 ttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggt 288  Q
    ||||| || ||||||||||||| |||| ||||||||||| |||| |||||| | ||| |||||||||||    
T  37557347 ttggacgttgttaaccataattttcaggtgttcaactacgtgtatatttgatcacctgaaaattgtggt 37557279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 37539173 - 37539215
Alignment:
Q  252 caactacatgtagatttgaacgccttaaaattgtggttaatca 294  Q
    ||||||||||||||||||||| | | |||||||||||||||||    
T  37539173 caactacatgtagatttgaacacttgaaaattgtggttaatca 37539215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 3970760 - 3970805
Alignment:
Q  113 ggttaacacagttcaaatatattattaattatgttctgtatatggt 158  Q
    |||||||||||||||||||| |  |||||||||||| |||||||||    
T  3970760 ggttaacacagttcaaatatgtagttaattatgttcagtatatggt 3970805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 13311683 - 13311773
Alignment:
Q  204 ttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatca 294  Q
    |||||| | |||||| |||||||||||||||  ||||| |||| ||||||||||||| |||| |||||| ||||||||| ||| |||||||    
T  13311683 ttcatttaccacgaaattggatgtggttaactctaattttcaggtgttcaactacatatagaattgaacaccttaaaatagtgtttaatca 13311773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 12908566 - 12908485
Alignment:
Q  213 cacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatca 294  Q
    |||| |||| |||||||||||| |||| | |||| |||||||||||||||||| |||||| ||||||||| ||| |||||||    
T  12908566 cacggattttgatgtggttaactataactttcaggtgttcaactacatgtagaattgaacaccttaaaatagtgtttaatca 12908485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 13309788 - 13309863
Alignment:
Q  204 ttcattaaacacgaatttggatgtggtt-aaccataattatcagatgttcaactacatgtagatttgaacgcctta 278  Q
    |||||| | |||||| |||||||||||| ||| |||||| |||| |||||||||||||||||| |||||| |||||    
T  13309788 ttcatttaccacgaacttggatgtggtttaactataattttcaggtgttcaactacatgtagaattgaacccctta 13309863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 25285250 - 25285294
Alignment:
Q  343 ccatatactgaacgtaattaaccacttatttgaattgtgttaacc 387  Q
    |||| |||||||  ||||||||||||||||||||| |||||||||    
T  25285250 ccatctactgaaaataattaaccacttatttgaatcgtgttaacc 25285294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 45512971 - 45513039
Alignment:
Q  204 ttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaac 272  Q
    |||| ||| ||||||  |||||||||||||||||||||  ||| |||||||  || |||||||||||||    
T  45512971 ttcactaaccacgaaaatggatgtggttaaccataatttgcaggtgttcaaacacttgtagatttgaac 45513039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 27891457 - 27891329
Alignment:
Q  186 attaacaaccaatgtaacttcattaaacacgaatttggatgtggttaaccataattat-cagatgttcaactacatgtagatttgaacgccttaaaattg 284  Q
    |||||| || || |||||||||||||  |||||| |||| || | ||||||||||| | ||  ||||||||||||||||||||| ||| ||| |||||||    
T  27891457 attaaccactaacgtaacttcattaacaacgaatatggacgtagctaaccataattttgcatgtgttcaactacatgtagatttaaacacctcaaaattg 27891358  T
Q  285 tggttaatcatgtataaatttgtggttaa 313  Q
     ||||||||| ||  || |||||||||||    
T  27891357 gggttaatcacgtccaagtttgtggttaa 27891329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 30526022 - 30526094
Alignment:
Q  174 gtgtcaaaacttattaacaaccaatgtaacttcattaaacacgaatttggatgtggttaaccataattatcag 246  Q
    |||||||||||||||||| |||||  ||||||||| || ||| |||||||| ||||||| |||||||| ||||    
T  30526022 gtgtcaaaacttattaaccaccaacataacttcatcaaccacaaatttggaagtggttagccataattttcag 30526094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 30566362 - 30566434
Alignment:
Q  174 gtgtcaaaacttattaacaaccaatgtaacttcattaaacacgaatttggatgtggttaaccataattatcag 246  Q
    |||||||||||||||||| |||||  ||||||||| || ||| |||||||| ||||||| |||||||| ||||    
T  30566362 gtgtcaaaacttattaaccaccaacataacttcatcaaccacaaatttggaagtggttagccataattttcag 30566434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 30526176 - 30526215
Alignment:
Q  348 tactgaacgtaattaaccacttatttgaattgtgttaacc 387  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  30526176 tactgaacgcaattaaccacttatttgaagtgtgttaacc 30526215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 30566516 - 30566555
Alignment:
Q  348 tactgaacgtaattaaccacttatttgaattgtgttaacc 387  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  30566516 tactgaacgcaattaaccacttatttgaagtgtgttaacc 30566555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 30526229 - 30526197
Alignment:
Q  99 acaactttttaagtggttaacacagttcaaata 131  Q
    |||||||||||||||||||||||| ||||||||    
T  30526229 acaactttttaagtggttaacacacttcaaata 30526197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 30566569 - 30566537
Alignment:
Q  99 acaactttttaagtggttaacacagttcaaata 131  Q
    |||||||||||||||||||||||| ||||||||    
T  30566569 acaactttttaagtggttaacacacttcaaata 30566537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 5008665 - 5008556
Alignment:
Q  204 ttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatcatgtataaat 303  Q
    |||||||| ||| ||||||||  | |||| |||||||| ||||||||| ||||||||||||||| |||| | | ||||  |||||| |||| ||  ||||    
T  5008665 ttcattaaccacaaatttggacatagttatccataattttcagatgttaaactacatgtagattggaacacgtgaaaaaagtggttgatcacgtccaaat 5008566  T
Q  304 ttgtggttaa 313  Q
    || |||||||    
T  5008565 ttttggttaa 5008556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 48493255 - 48493372
Alignment:
Q  193 accaatgtaacttcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaat 292  Q
    |||||| |||||||||||| |||||||| | |||| ||||| ||||||| |||  ||| ||| | ||||||||||||||| |   ||| ||||||| |||    
T  48493255 accaatataacttcattaatcacgaattcgaatgtcgttaatcataattttcaagtgtccaattgcatgtagatttgaacacgcgaaagttgtggtaaat 48493354  T
Q  293 catgtataaatttgtggt 310  Q
    || ||  |||||||||||    
T  48493355 cacgtcaaaatttgtggt 48493372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 5008749 - 5008717
Alignment:
Q  99 acaactttttaagtggttaacacagttcaaata 131  Q
    |||||||||||||||||||||||| ||||||||    
T  5008749 acaactttttaagtggttaacacaattcaaata 5008717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 7926575 - 7926520
Alignment:
Q  332 atattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaacc 387  Q
    |||| |||||||||| ||||  |||||| ||||||| |||||||||||||||||||    
T  7926575 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacc 7926520  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 7926714 - 7926784
Alignment:
Q  322 gacacctgtaatattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaaccgtttaa 393  Q
    ||||||| | |||||||||| |||| |||||||||||| ||||||| ||||| ||| ||||||||| |||||    
T  7926714 gacaccttttatattcattaaccatttactgaacgtaa-taaccacatatttaaatcgtgttaaccatttaa 7926784  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 15407348 - 15407262
Alignment:
Q  208 ttaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatca 294  Q
    |||| ||| ||||||||||||||||||||||||| | |   ||||||||  || ||||||||||| ||  |||||| ||||||||||    
T  15407348 ttaatcacaaatttggatgtggttaaccataatttttaagagttcaactttatctagatttgaacaccagaaaattatggttaatca 15407262  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 43111617 - 43111511
Alignment:
Q  205 tcattaaacacgaatttggatgtggttaaccataattatcagatgttcaactacatgtagatttgaacgccttaaaattgtggttaatcatgtataaatt 304  Q
    ||||||| ||| |||||| | || ||||||||||||| |||| |||||  ||||||||||| |  ||| ||| |||||||| ||||||||  |  |||||    
T  43111617 tcattaaccacaaatttgaacgtcgttaaccataattttcaggtgttctcctacatgtagagtcaaacacctcaaaattgtagttaatcacattcaaatt 43111518  T
Q  305 tgtggtt 311  Q
    |||||||    
T  43111517 tgtggtt 43111511  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 33412426 - 33412301
Alignment:
Q  99 acaactttttaagtggttaacacagttcaaatatattattaattatgttctgtatatggtaaattgatacacgaagtgtcaaaacttattaacaaccaat 198  Q
    ||||||||||||| |||||||||||||||||||  |  || ||||||||   || ||||| |||  ||| |  |||  |||||||| |||||| | ||||    
T  33412426 acaactttttaaggggttaacacagttcaaataggtggttgattatgtttaatagatggttaatgtatataacaagcatcaaaactcattaactatcaat 33412327  T
Q  199 gtaacttcattaaacacgaatttgga 224  Q
    ||||||||||||| ||| || |||||    
T  33412326 gtaacttcattaaccacaaacttgga 33412301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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