View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_30 (Length: 326)
Name: NF12039_low_30
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11307655 - 11307439
Alignment:
| Q |
1 |
gttactcttaagatatttatttcaaaaagtggcagcattacacattttctcaatgaaacnnnnnnnnnnnnnnnnttattcaaatttattttcatcttca |
100 |
Q |
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| T |
11307655 |
gttactcttaagatatttatttcaaaaagtggtagcattacacattttctcaatgaaacaaaaaaaaaag-----ttattcaaatttattttcatcttca |
11307561 |
T |
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| Q |
101 |
taacaactttgctctcacctttaatatttttaaattaatcattttatttcgaaaaatcttaaaaatataacttgaaacaatcattatgtattatttttct |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
11307560 |
taacaactttgctctcacctttaatattttcaaattaatcattttatttcgaaaaatcttaaaattataatttgaaacaatcattatgtattatttttct |
11307461 |
T |
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| Q |
201 |
cattattctatttcaatctata |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
11307460 |
cattattctatttcaatctata |
11307439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 11307860 - 11307941
Alignment:
| Q |
230 |
ttaaaaaatgacaggaaattgtgtgaattatgcaatcggaatcgacttaggaacaacccgttcttgtgttgctgtatatatg |
311 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11307860 |
ttaagaaatgacaggaaattgtgagaattatgcaatcggaatcgacttaggaacaacccgttcttgtgttgctgtatatatg |
11307941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 11159802 - 11159756
Alignment:
| Q |
260 |
tgcaatcggaatcgacttaggaacaacccgttcttgtgttgctgtat |
306 |
Q |
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| T |
11159802 |
tgcaataggaatcgacctaggaacaacctattcttgtgttgctgtat |
11159756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 11198354 - 11198308
Alignment:
| Q |
260 |
tgcaatcggaatcgacttaggaacaacccgttcttgtgttgctgtat |
306 |
Q |
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|||||| ||||||||| ||||||||||| ||||||||||||||||| |
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| T |
11198354 |
tgcaataggaatcgacctaggaacaacctattcttgtgttgctgtat |
11198308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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