View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_31 (Length: 322)
Name: NF12039_low_31
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 27194663 - 27194878
Alignment:
| Q |
96 |
gtggtagttttatttgtacttataccgatggaatattgtggtgctgtttctcatattttgaaattcacaggtaaaaattgacaacttgaagggaaagaaa |
195 |
Q |
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| T |
27194663 |
gtggtggttttatttgtacttataccgatggaatattgtggtgctatttcttatattttgaaattcacaggttaaaattgatagcttgaagggaaagaaa |
27194762 |
T |
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| Q |
196 |
cttggtttctatttttcagcatcatggtgtggtccgtgtcgaggattcactccaacgttggtggaagtctacgataaactctctccaaagggtgactttg |
295 |
Q |
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| T |
27194763 |
cttggtttctatttttcagcatcatggtgtggtccgtgtcgaggattcactccaaagttggtggaggtgtacgatgaactctctccaaatggtgaatttg |
27194862 |
T |
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| Q |
296 |
aggttgtttttgtctc |
311 |
Q |
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| T |
27194863 |
aggttgtttttgtctc |
27194878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 27209944 - 27210107
Alignment:
| Q |
148 |
atattttgaaattcacaggtaaaaattgacaacttgaagggaaagaaacttggtttctatttttcagcatcatggtgtggtccgtgtcgaggattcactc |
247 |
Q |
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| T |
27209944 |
atatcttgagattcacaggtaaaaattgatagcttgaagggaaagaaacttggtttttatttttcagcatcatggtgtggtccgtgtcgatcattcactc |
27210043 |
T |
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| Q |
248 |
caacgttggtggaagtctacgataaactctctccaaagggtgactttgaggttgtttttgtctc |
311 |
Q |
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| T |
27210044 |
caacgttggtggaggtgtacaatgaactctctcccaagggtgactttgaggttgtttatgtctc |
27210107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 27194565 - 27194644
Alignment:
| Q |
21 |
agtgaagttattacattgaccagagttaactaagtttgcctgtggtttattctggtgtttttgttattggacattgtggt |
100 |
Q |
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| T |
27194565 |
agtgaaattattacattgaccagagttgactaagttttccagtggtttattctagtgtttttcttattggacattgtggt |
27194644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 28392499 - 28392535
Alignment:
| Q |
117 |
ataccgatggaatattgtggtgctgtttctcatattt |
153 |
Q |
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| T |
28392499 |
ataccgatgaaatattgtggtgctatttctcatattt |
28392535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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