View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_32 (Length: 311)
Name: NF12039_low_32
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 41404603 - 41404322
Alignment:
| Q |
14 |
agagtttaatcaggcatagaaaaataacaaaagatgtagtcttgacaaaacaatcaattagatttcattttaatgaaaatgatctcaactagcttgagat |
113 |
Q |
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| T |
41404603 |
agagtttaatcaggcatagaaaaataacaaaagatgtagtcttgacaaaacaatcaattagatttcattttaatgaaaatgatctcaactagcttgagat |
41404504 |
T |
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| Q |
114 |
gcaccaactataatagtttaattaatgttgggagccaaagagagaagcataaactcatcttagagactgaaaaagaaaataaaaccgagcaaggtggtga |
213 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41404503 |
gcaccaactataatagtttaactaatgttgggagccaaagagagaagcataaactcatcttagagactgaaaaagaaaataaaaccgagtaaggtggtga |
41404404 |
T |
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| Q |
214 |
atataaatatcttatcttaatctaatgaaagaaatattgaatacttgaatgaccatgtttattagaattgatatgaaacaaa |
295 |
Q |
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| T |
41404403 |
atataaatatcttatcttaatctaatgaaagaaatattgaatacttgaatgaccatgtttattagaattgatatgaaacaaa |
41404322 |
T |
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