View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_33 (Length: 294)
Name: NF12039_low_33
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 11120786 - 11120636
Alignment:
| Q |
12 |
aagcagagaccatcaaaattaaagtttgcctttgaaaatttgtgctatagatatatacgttgtgttccttaccatttcatccacacttacttttctattg |
111 |
Q |
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| T |
11120786 |
aagcagagaccatcaaaattaaagtttgcctttgaaaatttgtgctataaatattttc-ttgtgttccttaccatttcatccacacttatttttctatag |
11120688 |
T |
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| Q |
112 |
cttttcttctttcatttaaactatatagagtttcaacaaaaatcattcatggc |
164 |
Q |
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| T |
11120687 |
cttttcttctttcatttaaaccatatacagtttctac-aaaatcattcatggc |
11120636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 11120566 - 11120525
Alignment:
| Q |
234 |
atgccatcacgatgagaactctgctttgcttcagttcaagtc |
275 |
Q |
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| T |
11120566 |
atgccatcacgatgagagctttgctttgcttcagttcgagtc |
11120525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 42125967 - 42125903
Alignment:
| Q |
55 |
gctatagatatatacgttgtgttccttaccatttcatccacacttacttttctattgcttttctt |
119 |
Q |
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| T |
42125967 |
gctataaatatttaggttgtgtttcttaccatttcatccacacttacttttcttttgattttctt |
42125903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 25520653 - 25520715
Alignment:
| Q |
55 |
gctatagatatatacgttgtgttccttaccatttcatccacacttacttttctattgcttttc |
117 |
Q |
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| T |
25520653 |
gctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctattgtttttc |
25520715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 12250711 - 12250631
Alignment:
| Q |
84 |
catttcatccacacttacttttctattgcttttcttctttcatttaaactatatagagtttcaacaaaaatcattcatggcgtgg |
168 |
Q |
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| T |
12250711 |
catttcatccacacttgcttttctattggtt---ttctttcagttaaaccatttacactttccac-aaaatcattcatggcgtgg |
12250631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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