View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_36 (Length: 267)
Name: NF12039_low_36
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 45 - 257
Target Start/End: Original strand, 21507911 - 21508123
Alignment:
| Q |
45 |
acccacatcctattcaacaacatgctgctgcatagaataaatcatctttcaaacccaccacccacacccttcttgttcttctttacaacaacaacactaa |
144 |
Q |
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| T |
21507911 |
acccacatcctattcaacaacgtgctaccgcatagaataaatcatctttcaaacccaccaccctcacccttcttattcttctttacaacaacaacaccaa |
21508010 |
T |
|
| Q |
145 |
atgttcgatgcactaaacctgctaattgaatgctttgtagtaagttagtcaattatccctacgtgaagctaattcaaataggaaagggataattataatt |
244 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21508011 |
atgttcgatgcattaagcctgctaattgaatgctttgtagtaagttagtcaattatccctacgtgaagctaattgaaataggaaagggataattataatt |
21508110 |
T |
|
| Q |
245 |
tcaacaccctttg |
257 |
Q |
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||||||||||||| |
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| T |
21508111 |
tcaacaccctttg |
21508123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 30248969 - 30249181
Alignment:
| Q |
27 |
tgttgaatttaatgttgaacccacatcctattcaacaacatgctgctgcatagaataaatcatctttcaaacccaccacccacacccttcttgttcttct |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30248969 |
tgttgaatttaatgttgaacccacatcctattcaacaacgtgccgctgcatagaataaatcatctttcaaacccaccacccacacccttcttgttcttct |
30249068 |
T |
|
| Q |
127 |
ttacaacaacaacactaaatgttcgatgcactaaacctgctaattgaatgctttgtagtaagttagtcaattatccctacgtgaagctaattcaaatagg |
226 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249069 |
ttacaacaacaacactaaatattcgatgcactaagcctgc------------------taagttagtcaattatccctacgtgaagctaattcaaatagg |
30249150 |
T |
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| Q |
227 |
aaagggataattataatttcaacaccctttg |
257 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30249151 |
aaagggataattataatttcaacaccctttg |
30249181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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