View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_38 (Length: 254)
Name: NF12039_low_38
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 40578240 - 40578021
Alignment:
| Q |
18 |
agaatactaacaattaaaagctctaggaaagaatacatttctaagatctgcaggcagaactagagcgataaattctggagcaaaacaaaaaatcataacg |
117 |
Q |
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| T |
40578240 |
agaatactaacaattaaaagctctaggaaagaatacatttctaagatctgcaggcagaactagagcgataaattctggagcaaaacaaaaaatcataact |
40578141 |
T |
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| Q |
118 |
ttggtaggaaggtttagaccaaacttcgtaaaaccaacttggttaatctcacgaagaacatgaatcataacaaaagagnnnnnnnnnntataataccttg |
217 |
Q |
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| T |
40578140 |
ttggtaggaaggtttagaccaaacttcgtaaaaccaacttggttaatctcacgaagaacatgaatcataacaaaagagaaaaaaaatatataataccttg |
40578041 |
T |
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| Q |
218 |
gcaaccattaatgaggtaag |
237 |
Q |
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|||||||||||||||||||| |
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| T |
40578040 |
gcaaccattaatgaggtaag |
40578021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 40571797 - 40571642
Alignment:
| Q |
26 |
aacaattaaaagctctaggaaagaatacatttctaagatctgcaggcagaactagagcgataaattctggagcaaaac-aaaaaatcataacgttggtag |
124 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||| |
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| T |
40571797 |
aacaattaaaagctctaggaaagacaatatttctaagatctgcaggcagaact---------------ggagcaaaaccaaaaaattgtaacattggtag |
40571713 |
T |
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| Q |
125 |
gaaggtttagaccaaacttcgtaaaaccaacttggttaatctcacgaagaacatgaatcataacaaaagag |
195 |
Q |
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||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||||| |
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| T |
40571712 |
gaaggtttaaaccaaacttggtaaaaccaacttgattaatctcacgatgaacatgaattataacaaaagag |
40571642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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