View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_39 (Length: 253)
Name: NF12039_low_39
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24947611 - 24947851
Alignment:
| Q |
1 |
ttatttagtattgtctgtttgtgtttctgctgtttgtacagtaaactcgattgtgtatgtttctgttattttggtgcgtagttttca------gtacacc |
94 |
Q |
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|||||||||||||||||| |||||||||||||||| | | || || |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24947611 |
ttatttagtattgtctgtctgtgtttctgctgtttctgctgt--------ttctgtatgtttctgttattttggtgcgtagttttcactttcagtacacc |
24947702 |
T |
|
| Q |
95 |
aaggtaaccttgtttgttaatatatcattctttggtcttttgnnnnnnntagaactacttacggtcataaaaagtaagctatttatataattaaattaag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24947703 |
aaggtaaccttgtttgttaatatatcattctttggtcttttgaaaaaaatagaactacttacggtcataaaaagtaagctatttatataattaaattaag |
24947802 |
T |
|
| Q |
195 |
gaaatatataccacaagagctgttgattaaaatggaacatatgtctctg |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24947803 |
gaaatatataccacaagagctgttgattaaaatggaacatatgtctctg |
24947851 |
T |
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