View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_4 (Length: 661)
Name: NF12039_low_4
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 44 - 394
Target Start/End: Complemental strand, 38483246 - 38482898
Alignment:
| Q |
44 |
ctgctgaaaataaagtggataagttattaaagaagnnnnnnncaggaaccgtgagcaaccataatcagtacagtacttgtaattattccactcaattgca |
143 |
Q |
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| T |
38483246 |
ctgctgaaaataaagtggataagttattaaagaagaaaaaaacaggaaccgtgagcaaccataatcagtacagtacttgtaattattccactcaattgca |
38483147 |
T |
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| Q |
144 |
tggtacttatggccattgaatggtaaaggtaatgtcatcaagtggttttggaggggtatttccgtaaacacatacagaagaaaatagcttcggcttgtag |
243 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483146 |
tgatacttatgaccattgaatggtaaaggtaatgtcatcaagtggttttggaggggtatttccgtaaacacatacagaagaaaatagcttcggcttgtag |
38483047 |
T |
|
| Q |
244 |
ggaaattctaccgataaaattatcgaataatagacgaaggggtcacgaagatgcttgggacgcaatctcatccattgatttcgaattgaattatcgatgc |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38483046 |
ggaaattctaccgataaaattatcgaataatagacgaaggggtcacgaagatgcttgggacgcaatctcatccatttatttcgaattgaattatcgatgc |
38482947 |
T |
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| Q |
344 |
actaacccatggggagcaaaggagttctcaagtcttggtcagctgctttga |
394 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38482946 |
actaacccat--ggagcaaaggagttctcaagtcttggtcagctgctttga |
38482898 |
T |
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