View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_41 (Length: 239)
Name: NF12039_low_41
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 39624911 - 39624697
Alignment:
| Q |
7 |
aaagaatctaggttttacaatttgttgtgtttagttatggatcaacaacttttaatattaaatcggaagatcacattactattagacatacatcaatgtt |
106 |
Q |
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| T |
39624911 |
aaagaatctaggttttaccatttgttgtgtttagttatggatcaacaacttttaatattaaatcggaagatcacattactattagacatacatcaatgtt |
39624812 |
T |
|
| Q |
107 |
gtagatggatatttcataattggagattctgagtctttccctagtaacaatgaaacagtagtagaattaaacatattttacatgaagttggagattctga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39624811 |
gtagatggatatttcataattggagattctgagtcttttcctagtaacaatgaaacagtagtagaattacacatattttacatgaagttggagattctga |
39624712 |
T |
|
| Q |
207 |
gtcttgtgtttatat |
221 |
Q |
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||||||||||||||| |
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| T |
39624711 |
gtcttgtgtttatat |
39624697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 39634461 - 39634247
Alignment:
| Q |
7 |
aaagaatctaggttttacaatttgttgtgtttagttatggatcaacaacttttaatattaaatcggaagatcacattactattagacatacatcaatgtt |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39634461 |
aaagaatctaggttttaccatttgttgtgtttagttatggatcaacaacttttaatattaaatcggaagatcacattactattagacatacatcaatgtt |
39634362 |
T |
|
| Q |
107 |
gtagatggatatttcataattggagattctgagtctttccctagtaacaatgaaacagtagtagaattaaacatattttacatgaagttggagattctga |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39634361 |
gtagatggatatttcataattggagattctgagtcttttcctagtaacaatgaaacagtagtagaattacacatattttacatgaagttggagattctga |
39634262 |
T |
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| Q |
207 |
gtcttgtgtttatat |
221 |
Q |
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||||||||||||||| |
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| T |
39634261 |
gtcttgtgtttatat |
39634247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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