View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12039_low_6 (Length: 624)
Name: NF12039_low_6
Description: NF12039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12039_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 6 - 609
Target Start/End: Complemental strand, 39742400 - 39741797
Alignment:
| Q |
6 |
gtcatcgagagtgaggggttacgtgactatataattgtgtctcgttaatctgcacatgtctttttcatagatgatttttagggttataggatgaaaatgt |
105 |
Q |
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| T |
39742400 |
gtcatcgagagtgaggggttatgtgactatataattgtgtctcgttaatctgcacatgtccttttcatagatgatttttagggttataggatgaaaatat |
39742301 |
T |
|
| Q |
106 |
gtgagtcgtatccagtgtgattcgcggatcaatgtttaatctccatcaaatgatgctaattagatcatcgcaactttataagatgctccttgatgattca |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39742300 |
gtgagtcaaatccagtgtgattcgcggatcaatgtttaatctccatcaaatgatgctaattagatcatcgcaactttataagatgctccttaatgattca |
39742201 |
T |
|
| Q |
206 |
atctcctaatagaatgagcttaggcctagtccataacaaaatggaaaacggagattcatttggcatgtatgggtatgatgtggcataatcaagttttatg |
305 |
Q |
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| T |
39742200 |
atctcttaatggaatgagcttaggcctagtccataacaaaatggaaaacggagattcatttggcatgtatgggtatgatgtggcataatcaagttttgtg |
39742101 |
T |
|
| Q |
306 |
gtattcgttataccacaactttaataagacattcaaagggctcatgcaaaaattcatgaacacaagtaccattcgaagcatagcatattataatgtacat |
405 |
Q |
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| T |
39742100 |
gtattcgttataccacaactttaataagacattcaaagggctcatgcaaaaattcatgaacacaagtaccattcgaagcatagcatattataatgtatat |
39742001 |
T |
|
| Q |
406 |
gcttaaccatcatcatacaactttaatatacatttatcacttcaacttcaagatacaataatactttaatgtagctattgggaaggggtcatgcgttgtg |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39742000 |
gcttaaccatcatcatacaactttaatatacatttatcacttcaacttcaagatacaataatactttaatgtagctattgggaaggggtcatgcattgtg |
39741901 |
T |
|
| Q |
506 |
cccttgtgcccactcacccaatcattaccacatcttgttgggagctccaatttgtccacattgctcggtcatcaattgccaccaccacgagattggccct |
605 |
Q |
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| T |
39741900 |
cccttgtgcccactcacccaatcattaccacatcttgttgggagctccaatttgtccacattgctcggtcatcaattgccagcaccacgagattggccct |
39741801 |
T |
|
| Q |
606 |
actg |
609 |
Q |
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|||| |
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| T |
39741800 |
actg |
39741797 |
T |
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