View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1203_low_11 (Length: 291)

Name: NF1203_low_11
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1203_low_11
NF1203_low_11
[»] chr3 (25 HSPs)
chr3 (30-279)||(23467701-23467950)
chr3 (31-279)||(23400973-23401234)
chr3 (32-173)||(23497915-23498069)
chr3 (32-93)||(23453035-23453096)
chr3 (42-167)||(23446172-23446310)
chr3 (35-93)||(23350956-23351014)
chr3 (31-93)||(23382521-23382583)
chr3 (32-92)||(23477560-23477620)
chr3 (31-90)||(23403668-23403727)
chr3 (189-279)||(23382268-23382358)
chr3 (189-279)||(23462031-23462121)
chr3 (31-93)||(23462284-23462346)
chr3 (189-274)||(23350714-23350799)
chr3 (188-272)||(36001237-36001321)
chr3 (189-244)||(23438640-23438695)
chr3 (31-82)||(23438869-23438920)
chr3 (188-240)||(23446045-23446097)
chr3 (188-242)||(23434171-23434225)
chr3 (189-243)||(23471180-23471234)
chr3 (31-93)||(23471394-23471456)
chr3 (190-279)||(23403427-23403516)
chr3 (183-240)||(23477351-23477408)
chr3 (97-173)||(23477466-23477542)
chr3 (93-122)||(23403623-23403652)
chr3 (188-240)||(23497782-23497834)
[»] scaffold0201 (2 HSPs)
scaffold0201 (189-279)||(10203-10293)
scaffold0201 (31-93)||(10429-10491)
[»] chr4 (1 HSPs)
chr4 (188-239)||(12898192-12898243)
[»] chr2 (1 HSPs)
chr2 (207-239)||(16120403-16120435)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 23467950 - 23467701
Alignment:
Q  30 ggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctgccgttaattgcacttatctggacacatactccattc 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23467950 ggaatggcttgatttagatgattgcaggaaaattgtgtctctaacagagcttccaccatccctgccgttaattgcagttatctggacacatactccattc 23467851  T
Q  130 aaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttgattttcagacaatagaggcttcaataattattcctcc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467850 aaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttgattttcagacaatagaggcttcaataattattcctcc 23467751  T
Q  230 tattccaaaatctgatttgtgcagttttatattttgcatcattctttctg 279  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23467750 tattccaaaatctgatttgtgcagttttatattttccatcattctttctg 23467701  T

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Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 279
Target Start/End: Complemental strand, 23401234 - 23400973
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg-------------ccgttaattgcacttatctggaca 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||| ||||||    
T  23401234 gaatgacttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctgttatatttgagagccgttaattgcacttatatggaca 23401135  T
Q  118 catactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatgtttgattttcagacaatagaggcttcaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23401134 catactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcatgcatctttgattttcagacaatagaggcttcaat 23401035  T
Q  218 aattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctg 279  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23401034 aattattcctcctattccaaaatctgattggtgcagttttatattttgcatcattctttctg 23400973  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 23498069 - 23497915
Alignment:
Q  32 aatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccc-------------tgccgttaattgcacttatctggacac 118  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||             |||| ||||||||||||||||||||||    
T  23498069 aatggctagttttagatgattgcaggaaacttgtgtctctaacagagcttccgccatccctattatgtttgagtgccattaattgcacttatctggacac 23497970  T
Q  119 atactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagac 173  Q
    | |||||| ||||| ||||||| || | |||||  |||||| ||||||| |||||    
T  23497969 agactccactcaacggtcatttcttgagaacatagtacaaatcttctctaaagac 23497915  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 23453096 - 23453035
Alignment:
Q  32 aatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg 93  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  23453096 aatggcttgatttagatgattgcaggaaacttgtgtctctagcagagcttccagcatccctg 23453035  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 23446310 - 23446172
Alignment:
Q  42 tttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccc-------------tgccgttaattgcacttatctggacacatactccatt 128  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||             |||| ||||||||||||||||||||||| |||||| |    
T  23446310 tttagatgattgcaggaaacttgtgtctgtaacagagcttccgccatccctattatctttgagtgccattaattgcacttatctggacacagactccact 23446211  T
Q  129 caaccgtcattttttaataacatgttacaaaccttctct 167  Q
    |||| ||||||| || | |||||| |||||| |||||||    
T  23446210 caacggtcatttcttgagaacatggtacaaatcttctct 23446172  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 23351014 - 23350956
Alignment:
Q  35 ggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg 93  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  23351014 ggcttgatttagatgattgcaggaaactagtgtccctagcagagcttccaccatccctg 23350956  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 23382583 - 23382521
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg 93  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  23382583 gaatggcttgaattggatgattgcaggaaacttgtgtctctgacagagcttccgccatccctg 23382521  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 23477620 - 23477560
Alignment:
Q  32 aatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccct 92  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||  |||||||    
T  23477620 aatggcttgatttagatggttgcaggaaacttgtgtctctaacagaacttccgtcatccct 23477560  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 23403727 - 23403668
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatcc 90  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||    
T  23403727 gaatggcttgaattggatgattgcaggaaacttgtgtctctgacagagcttccgccatcc 23403668  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 23382358 - 23382268
Alignment:
Q  189 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctg 279  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || ||||||    
T  23382358 tttgattttcagacaatcaaggcttcaataagtattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctg 23382268  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 23462121 - 23462031
Alignment:
Q  189 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctg 279  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || ||||||    
T  23462121 tttgattttcagacaatcaaggcttcaataactattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctg 23462031  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 23462346 - 23462284
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg 93  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||| |||| |||||||||    
T  23462346 gaatggcttgaattagacaattgcaggaaacttgtgtctctaacagagattccgccatccctg 23462284  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 23350799 - 23350714
Alignment:
Q  189 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattct 274  Q
    ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| | |||||  |||| ||||| |||||| ||||    
T  23350799 tttgattttaagacagtagaggcttcaataagtattcctccaattccaaaatcttacttgtgtggtttcatattctgcatcgttct 23350714  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 36001321 - 36001237
Alignment:
Q  188 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcatt 272  Q
    |||| |||||||  ||| |||||| || ||| |||||||||||||||||||||||||||||||  |||| || ||||||||||||    
T  36001321 gttttattttcaatcaacagaggcctcgatagttattcctcctattccaaaatctgatttgtgttgtttaattttttgcatcatt 36001237  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 23438695 - 23438640
Alignment:
Q  189 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctga 244  Q
    ||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  23438695 tttgattttcagacaactgaggcttcaataactattcttcctattccaaaatctga 23438640  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 23438920 - 23438869
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttc 82  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  23438920 gaatggcttgaattagacgattgcaggaaacttgtgtctctgacagagcttc 23438869  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 23446097 - 23446045
Alignment:
Q  188 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 240  Q
    |||||||||||| |||||| ||||||||||||  |||||||||||||||||||    
T  23446097 gtttgattttcaaacaataaaggcttcaataaccattcctcctattccaaaat 23446045  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 23434225 - 23434171
Alignment:
Q  188 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatct 242  Q
    |||||||||||| |||| | ||||||||||||  |||||||||||||||||||||    
T  23434225 gtttgattttcaaacaacaaaggcttcaataaccattcctcctattccaaaatct 23434171  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 23471234 - 23471180
Alignment:
Q  189 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctg 243  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||  ||||||||    
T  23471234 tttgattttcagacaatcgaggcttcaataactattcttcctattaaaaaatctg 23471180  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 23471456 - 23471394
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg 93  Q
    ||||||||||| ||||||||||||||||| || ||| |||| | ||||||||| |||||||||    
T  23471456 gaatggcttgaattagatgattgcaggaacctcgtgactctgatagagcttccgccatccctg 23471394  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 23403516 - 23403427
Alignment:
Q  190 ttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctg 279  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||| | |||||||  ||| |  |||| |||||||||||| || ||||||    
T  23403516 ttgatttgcagacaatcgaggcttcaataactattcttcctattactaaatctgtcttgcgtggtttcatattttgcatccttttttctg 23403427  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 23477408 - 23477351
Alignment:
Q  183 tgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 240  Q
    |||| |||||||||||| |||||  ||||||||||||  |||||||||||||||||||    
T  23477408 tgcaagtttgattttcaaacaatgaaggcttcaataaccattcctcctattccaaaat 23477351  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 23477542 - 23477466
Alignment:
Q  97 ttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagac 173  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||| || | |||||| ||||||  |||||| |||||    
T  23477542 ttaattgcacttatctggatacagactccactcaacggtcatttcttgagaacatggtacaaattttctctaaagac 23477466  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 23403652 - 23403623
Alignment:
Q  93 gccgttaattgcacttatctggacacatac 122  Q
    ||||||||||||||||||||||||||||||    
T  23403652 gccgttaattgcacttatctggacacatac 23403623  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 23497834 - 23497782
Alignment:
Q  188 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 240  Q
    |||||||||||| |||||  ||||||||||||  |||||||| ||||||||||    
T  23497834 gtttgattttcaaacaatgaaggcttcaataaccattcctccgattccaaaat 23497782  T

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Target: scaffold0201 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 10293 - 10203
Alignment:
Q  189 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctg 279  Q
    ||||||||||||||||| | ||||||||||  ||||| ||||||| |||||||||| |||||  |||| ||||||||||||||||||||||    
T  10293 tttgattttcagacaatcggggcttcaatatctattcttcctattacaaaatctgacttgtgtggtttcatattttgcatcattctttctg 10203  T

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Target: scaffold0201; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 10491 - 10429
Alignment:
Q  31 gaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccaccatccctg 93  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||  |||| |||||||||    
T  10491 gaatggcttgaattagatgattgcaggaaacttgtgtctgtaacagacattccgccatccctg 10429  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 12898192 - 12898243
Alignment:
Q  188 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaa 239  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  12898192 gtttgattttcaaacaatagaggcgtcaatagttattcctcctattccaaaa 12898243  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 16120435 - 16120403
Alignment:
Q  207 gaggcttcaataattattcctcctattccaaaa 239  Q
    ||||||||||| |||||||||||||||||||||    
T  16120435 gaggcttcaatcattattcctcctattccaaaa 16120403  T

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