View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_14 (Length: 264)
Name: NF1203_low_14
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 1502275 - 1502083
Alignment:
| Q |
68 |
cacaatgaaataaatttgcataatactaactttatgagttaaatttttggatttaaatgacatgcatgcatgtatgttataacataagaaagaggtgaaa |
167 |
Q |
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| T |
1502275 |
cacaatgaaataaattttcataatactaagtttatgagttaaatttttggatttaaatgacatgcatgcatgt----tataacataagaaagaggtgaaa |
1502180 |
T |
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| Q |
168 |
cagaaggtaactatacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctg |
264 |
Q |
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| T |
1502179 |
cagaaggtaactatacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctg |
1502083 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 28029340 - 28029422
Alignment:
| Q |
181 |
tacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcct |
263 |
Q |
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| T |
28029340 |
tacttgaatcagttccatcaggaaatgaacatcttttgcataaagctcggcggagagattcttaacggcatgatgaagatcct |
28029422 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 3008195 - 3008115
Alignment:
| Q |
181 |
tacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatc |
261 |
Q |
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| T |
3008195 |
tacttgaatgagttccatgagaaaatgaacatctttggcgtaaagctcggcagagagattcttgactgcatgatggagatc |
3008115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 37800095 - 37800177
Alignment:
| Q |
181 |
tacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcct |
263 |
Q |
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| T |
37800095 |
tacttgtatgagctccattaggaaatggacatcctttgcataaagctcagcagagagattcttaacagcgtgatgtagatcct |
37800177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 2925476 - 2925556
Alignment:
| Q |
181 |
tacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatc |
261 |
Q |
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| T |
2925476 |
tacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacagcatgatgaagatc |
2925556 |
T |
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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 2935314 - 2935378
Alignment:
| Q |
185 |
tgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagc |
249 |
Q |
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| T |
2935314 |
tgaatgagctccattaggaaatgaacatctctggtatatagttcatctgagagattcttgacagc |
2935378 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 32695337 - 32695395
Alignment:
| Q |
203 |
aaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatc |
261 |
Q |
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| T |
32695337 |
aaatgaatatctttagcataaagttcagcggagagatatttgacagcatgatgaagatc |
32695395 |
T |
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