View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_16 (Length: 261)
Name: NF1203_low_16
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25927003 - 25926841
Alignment:
| Q |
1 |
agtttccaaatgtttttactacatatatagtgtgatgttaatgtaaatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaatcat |
100 |
Q |
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| T |
25927003 |
agtttccaaatgtttttactacatatatagtgtgatgctaatatagatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaatcat |
25926904 |
T |
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| Q |
101 |
gttgtcacatttaacttatgttatctctataaaacaaataaaatctatagaccatacgcttta |
163 |
Q |
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| T |
25926903 |
gttgtcacatttaatttatgttatctttataaaacaaataaaatctatacaccgtacgcttta |
25926841 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 5747045 - 5746977
Alignment:
| Q |
29 |
agtgtgatgttaatgtaaatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaat |
97 |
Q |
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| T |
5747045 |
agtgtgatgttaatataaatatattatgaaattgtgttcaattaataaattttgttgtctattttaaat |
5746977 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 43328299 - 43328270
Alignment:
| Q |
68 |
aattaataaattttgttgtcaattttaaat |
97 |
Q |
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| T |
43328299 |
aattaataaattttgttgtcaattttaaat |
43328270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 52975312 - 52975251
Alignment:
| Q |
41 |
atgtaaatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaatcatgt |
102 |
Q |
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||||||||| ||||||||||| || |||| || |||||||||||||||||||||| |||| |
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| T |
52975312 |
atgtaaatgtattatgaaattgtattcaattgatcaattttgttgtcaattttaaattatgt |
52975251 |
T |
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