View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_17 (Length: 254)
Name: NF1203_low_17
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_17 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 37575936 - 37575719
Alignment:
| Q |
28 |
caaggttatggttgatcggtggaaatgaatcatgatcaaacaacggggagcaaaagcaaatggcaagcaatgtgtcagtaaactgttgtgactgtaaacc |
127 |
Q |
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| T |
37575936 |
caaggttatggttgatcggtggaaatgaatcatgatcaaacaatggggagcaaaagcaaatggcaagcaatgtgtcggtaaccttttgtgactgtaaacc |
37575837 |
T |
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| Q |
128 |
attcatgatggatccatcagtcacaaaaacccattgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgcgacaacatcgaac |
227 |
Q |
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| T |
37575836 |
attcatgatggatccatcagtcacaaaaacccattgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgcgacaacatcgaac |
37575737 |
T |
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| Q |
228 |
tcgctgtataagaataat |
245 |
Q |
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|||||||||||||||||| |
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| T |
37575736 |
tcgctgtataagaataat |
37575719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 37576053 - 37576009
Alignment:
| Q |
53 |
tgaatcatgatcaaacaacggggagcaaaagcaaatggcaagcaa |
97 |
Q |
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| T |
37576053 |
tgaatcatgatcaatcaatagggagcaaaagcaaatggcaagcaa |
37576009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 10438959 - 10438773
Alignment:
| Q |
28 |
caaggttatggttgatcggtggaaatgaatcatgatcaaacaacggggagcaaaagcaaatggcaagcaatgtgtcagtaaactgttgtgactgtaaacc |
127 |
Q |
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| T |
10438959 |
caaggttatggttgattggtggaaatgaatcatgatcaatcaatggggagcaaaagaaaatagcaagcaatgtgtccgtaaacttctctgattgtaaacc |
10438860 |
T |
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| Q |
128 |
attcatgatggatccatcagtcacaaaaacccattgcttcttttgctgacttgacgtataaacctttcccacatgcacaacaaatgc |
214 |
Q |
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| T |
10438859 |
tttcatgatcgatccatcagtcacaaaaacccattgcttcttttgctgacctgatgtataagcctttccgacatgcacaacaaatgc |
10438773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 23337 - 23374
Alignment:
| Q |
208 |
caaatgcgacaacatcgaactcgctgtataagaataat |
245 |
Q |
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| T |
23337 |
caaatgcaacaatatcgaactcgctgtataagaataat |
23374 |
T |
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