View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_2 (Length: 456)
Name: NF1203_low_2
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 39478365 - 39478003
Alignment:
| Q |
1 |
caatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggtgagaaatatctggcactatcttatgagaccatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39478365 |
caatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggtgagaaatatctggcactatcttatgagactatgat |
39478266 |
T |
|
| Q |
101 |
aaatatacaagggaatagttgatccccttgtcaattggcttaaggtttgtaaactgttttttgatttcatcatgcatgcttctttgtttatctacattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39478265 |
aaatatacaagggaatagttgatccccttgtcaattggtttacggtttgtaaactgttttttgatttcatcatgcatgcttctttgtttatctacattat |
39478166 |
T |
|
| Q |
201 |
tcatttaacttagttgaactctgagatattttgcttaaaagaaatgaaaatgaaaattagaatgagcaatatccctaggagaaatgatattgacacataa |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39478165 |
tcatttaatttagttgaactctgagatattttgcttaaaagaaatgaaaatgaaaattagaatgagcaatatccctaggagaaatgatattgacacataa |
39478066 |
T |
|
| Q |
301 |
tttgtttcaactcattaatcatccacttaacacaattaaccacgattttcaattgcatgtttg |
363 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39478065 |
tttgtttcaactcattaatcatccacttaacacaattaaccacgattttcaattgcatgtttg |
39478003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39474392 - 39474316
Alignment:
| Q |
1 |
caatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggtgagaaatatctg |
77 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||||||||||||| |
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|
| T |
39474392 |
caatttccttaagcttctcagcttgagtaaccaaagcctctgacatgaggaggaactcatcaggtgagaaatatctg |
39474316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39485560 - 39485496
Alignment:
| Q |
1 |
caatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggt |
65 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
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|
| T |
39485560 |
caatttccttaagcttctcagcttgaataaccaaagcctctgacataaggaggatctcataaggt |
39485496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 17595156 - 17595110
Alignment:
| Q |
307 |
tcaactcattaatcatccacttaacacaattaaccacgattttcaat |
353 |
Q |
| |
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|||||||||||||||||| | || |||||||||||||||||||||| |
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|
| T |
17595156 |
tcaactcattaatcatccgttaaatacaattaaccacgattttcaat |
17595110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 3603507 - 3603544
Alignment:
| Q |
312 |
tcattaatcatccacttaacacaattaaccacgatttt |
349 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
3603507 |
tcattaaccatccacttaacacaattaaccacggtttt |
3603544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 40829695 - 40829651
Alignment:
| Q |
308 |
caactcattaatcatccacttaacacaattaaccacgattttcaa |
352 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||| |||||||| |
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|
| T |
40829695 |
caactcattaaccatccactgagcacaattaaccacaattttcaa |
40829651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 14279091 - 14279131
Alignment:
| Q |
311 |
ctcattaatcatccacttaacacaattaaccacgattttca |
351 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
14279091 |
ctcattaaccatccacaaaacacaattaaccacgattttca |
14279131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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