View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_22 (Length: 242)
Name: NF1203_low_22
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 49872022 - 49871787
Alignment:
| Q |
7 |
gaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattgg |
106 |
Q |
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| T |
49872022 |
gaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattgg |
49871923 |
T |
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| Q |
107 |
ataaatttgatcttaacaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttga |
206 |
Q |
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| T |
49871922 |
ataaatttgatcttaacaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttga |
49871823 |
T |
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| Q |
207 |
gaacacaactacccatgcaggacaaaccatggctaa |
242 |
Q |
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| T |
49871822 |
gaacacaactacccatgcaggacaaaccatggctaa |
49871787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 49866091 - 49865856
Alignment:
| Q |
7 |
gaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattgg |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866091 |
gaattagctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattgg |
49865992 |
T |
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| Q |
107 |
ataaatttgatcttaacaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttga |
206 |
Q |
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| T |
49865991 |
ataaatttgatattagaaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttga |
49865892 |
T |
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| Q |
207 |
gaacacaactacccatgcaggacaaaccatggctaa |
242 |
Q |
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| T |
49865891 |
gaacacaactacccatgcagaacaaaccatggctaa |
49865856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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