View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_23 (Length: 239)
Name: NF1203_low_23
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 37814037 - 37814244
Alignment:
| Q |
8 |
cgaagaatattgttgataatgcagaatcatactaaaagacatgtgatatgagtttctaaacacatgactaacnnnnnnnn-ccaaattaaaattttaatt |
106 |
Q |
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| T |
37814037 |
cgaagaaaattgttgataatgcagaatcatactaaaagacatgtgatatgagtttctaaacacatgactaacaaaaacaaaccaaattaaaattttaatt |
37814136 |
T |
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| Q |
107 |
tccatatgaaaattcaaattgagaataaattgcttgatattctatccaggagtgagtaaaaataaaattccatcttggtatagtaacaaagtggtttaat |
206 |
Q |
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| T |
37814137 |
tccatatgaaaattcaaattgagaataaattgcttgatattctatctaggggtgagtaaaaataaaattccatcttggtatagtaacaaagtggtttaat |
37814236 |
T |
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| Q |
207 |
tttgaaag |
214 |
Q |
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| T |
37814237 |
tttgaaag |
37814244 |
T |
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