View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_28 (Length: 207)
Name: NF1203_low_28
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2843960 - 2844062
Alignment:
| Q |
1 |
agaactgaatgcaacatcagactggaaactatcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgagttcctgac |
100 |
Q |
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| T |
2843960 |
agaactgaatgcaacatcagactggaaactatcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgagttcctgac |
2844059 |
T |
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| Q |
101 |
cta |
103 |
Q |
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||| |
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| T |
2844060 |
cta |
2844062 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 2839767 - 2839840
Alignment:
| Q |
30 |
tatcacaacgaataaccgaatccatttttccataatcataactccccctcttcctccgccgagttcctgaccta |
103 |
Q |
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|||||||| |||| |||||||| | ||||||||||||||||| || ||||||||||||||| |||| |||||| |
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| T |
2839767 |
tatcacaaggaatgaccgaatcgttctttccataatcataactacctctcttcctccgccgaattccagaccta |
2839840 |
T |
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