View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_3 (Length: 400)
Name: NF1203_low_3
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 22362932 - 22362583
Alignment:
| Q |
1 |
taggtgatacttttcaggtacatatatgcatctataatttcacatgtttcacttacatattatccactttatgttaacttgttaccatgtttttctaaca |
100 |
Q |
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| T |
22362932 |
taggtgatacttttcaggtacatatatgcttctataatttcacatgtttcactcacatattatccactttatgttatcttgttaccatgtttttctaaca |
22362833 |
T |
|
| Q |
101 |
ttcttcaattttatgtagcctttctatattggtggaggagataatcaacaatctgtgctcgctggattcggaccgacaattcttgaaactgcatttaatg |
200 |
Q |
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| T |
22362832 |
ttcttcaattttatgtagcctttctatattggtggaggagataatcaacaatctgtgcttgctggattcggaccgacaattcttgaaactgcatttaatg |
22362733 |
T |
|
| Q |
201 |
taagctattgcctaatgcagcaatattacaatatatcaagtggatctaaattgtgtattattattaattatcacttataggaatcaagagcaatgataga |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||| |
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| T |
22362732 |
taagctattgcctaatgtagcaatattacaatatatcaagtgggtctaaattgtgtattattgttaattaccacttataggaatcaagaacaaagataga |
22362633 |
T |
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| Q |
301 |
gagaattttcaccaagaaacaagatggtccaattgtgttcattgatgatg |
350 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362632 |
gagaatcttcaccaagaaacaagatggtccaattgtgttcattgatgatg |
22362583 |
T |
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