View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_6 (Length: 366)
Name: NF1203_low_6
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 122 - 337
Target Start/End: Original strand, 22158947 - 22159154
Alignment:
| Q |
122 |
gaaacatgaggaagagaacaaaaagggaccattacaacgtcaccaatcacgtgtccaacgtggactataattaattcattattatctcaaacattactat |
221 |
Q |
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| T |
22158947 |
gaaacatgaggaagagaacaaaaagggaccattacaacgttaccaatcacatgtccaacgtggactataattaattcattattatctcaaacattactat |
22159046 |
T |
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| Q |
222 |
gcttacattttagatctaatctcacataaaattgaatcgtgttcacttatcttgcttcctcctatgttacttggaaagtggtctaaatggagaaaacatc |
321 |
Q |
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| T |
22159047 |
gcttacatttgagatctaatctcacatcaaattgaatcgtgttcacttatcttgcttcctc--------cttggaaagtggtctaaatggagaaaacatc |
22159138 |
T |
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| Q |
322 |
atgtgcatgtactctt |
337 |
Q |
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|||||||||||||||| |
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| T |
22159139 |
atgtgcatgtactctt |
22159154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 34835444 - 34835543
Alignment:
| Q |
13 |
aatatcacctggacgtcgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtc |
112 |
Q |
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| T |
34835444 |
aatatcacccggacgccgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtc |
34835543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 35336366 - 35336319
Alignment:
| Q |
44 |
attgtgttccaagcataatcaaatgtactcagcagttgagattctgtt |
91 |
Q |
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| T |
35336366 |
attgtgttccatgcataatcaaatgtactaagcagctgtgattctgtt |
35336319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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