View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1203_low_7 (Length: 366)
Name: NF1203_low_7
Description: NF1203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1203_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 4223915 - 4223571
Alignment:
| Q |
30 |
attaaacgcacacagttttactttactttatttt--ctttttgaggcaaaacgtatgcacaatgttattgaaatgaaagtcaagatattaataaatgaga |
127 |
Q |
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| T |
4223915 |
attaaacgcacacagttttactttactttattttttctttttgtggcaaaacgtatgcacaatgttattgaaatgaaagtcaagatattaataaatgaga |
4223816 |
T |
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| Q |
128 |
tacgttacgtgacgtgagctagcaaccaaaaggaagaaaatagagaatgtttattattggttacctgagaaacaacgacatggcggacgctactatccac |
227 |
Q |
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| T |
4223815 |
tacgttacgtgacgtgagctagcaaccaaaaggaagaaaatagagaatgtttattattggttacctgagaaacaacgacatggcggacgctactatccac |
4223716 |
T |
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| Q |
228 |
accatcatgctctccaaatgaatgagaatgac------catgtccatcaccatggttttgatgtgaatgtccatgctgcgacgcatgagcatgcatcccc |
321 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4223715 |
accatcatgctctccaaatgaatgagaatgaccatgaccatgtccatcaccatggttttgatgtgaatgtccatgttgcgacgcatgagcatgcatcccc |
4223616 |
T |
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| Q |
322 |
acaatatgcattccaccaccaaaagtctctctctgctcctccaca |
366 |
Q |
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| T |
4223615 |
acaatatgcattccaccaccaaaagtctctccctgaacctccaca |
4223571 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 340
Target Start/End: Original strand, 48080889 - 48080919
Alignment:
| Q |
310 |
gcatgcatccccacaatatgcattccaccac |
340 |
Q |
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| T |
48080889 |
gcatgcatccccacaatatgcattccaccac |
48080919 |
T |
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