View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_1 (Length: 795)
Name: NF12040_high_1
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 11 - 781
Target Start/End: Original strand, 26484329 - 26485114
Alignment:
| Q |
11 |
tagaatatgatttttcggtttactacttggagtttaaagtccaatgtttgtttgttctgttttgtgcaggttagaagggaaaaaataagcgaaaggatga |
110 |
Q |
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| T |
26484329 |
tagaatatgatttttcggtttactacttggagtttaaagtccaatgtttgtttgttctgttttgtgcaggttagaagggaaaaaataagcgaaaggatga |
26484428 |
T |
|
| Q |
111 |
agtatttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484429 |
agtatttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagt |
26484528 |
T |
|
| Q |
211 |
cgaggttagagttctagtcctgtttgatctatcatgttttagtttataatatggtatctattttaagaata----------------actgaactgtaca |
294 |
Q |
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| T |
26484529 |
cgaggttagagttctagtcctgtttgatctatcatgttttagtttataatatggtatctattttaagaatagtttcaagtccatctaactgaactgtaca |
26484628 |
T |
|
| Q |
295 |
ttatcaccaaatgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484629 |
ttatcaccaaatgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatg |
26484728 |
T |
|
| Q |
395 |
caagttgtagaaatttaaggttgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcaca |
494 |
Q |
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| T |
26484729 |
caagttgtagaaatttaaggctgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcaca |
26484828 |
T |
|
| Q |
495 |
acacagccataaattattttagaatgcatgctgaaagtgctcctaaattatttcatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaa |
594 |
Q |
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| T |
26484829 |
acacagccataaattattttagaatgcatgctg-aagtgctcctaaattatttgatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaa |
26484927 |
T |
|
| Q |
595 |
atgtctaaccctgcatatcttcaattcaattcagcacaacaacaagtttcatgttgtggtggattgataaacaatatggggatagttcctccggaaattg |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
26484928 |
atgtctaaccctgcatatcttcaattcaattcagcacaacaacaagtttcatgttgtggtggattgataaacaatatggggatactccctccggaaattg |
26485027 |
T |
|
| Q |
695 |
gggttcgaaggaacattaatgcaccggcatctgcatctttacctgaaatctttctcgacccatcatgtttcactgtatgtttcctct |
781 |
Q |
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| T |
26485028 |
gggttcgaaggaacattaatgcaccggcatctgcatctttacctgaaatctttctcgacccatcatgtttcactgtatgtttcctct |
26485114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 54615979 - 54616120
Alignment:
| Q |
75 |
tgcaggttagaagggaaaaaataagcgaaaggatgaagtatttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatga |
174 |
Q |
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||||||||||||||||||| || || || || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
54615979 |
tgcaggttagaagggaaaagattagtgagagaatgaagtatttgcaagatttagtaccaggatgcaacaaaattacaggaaaagctggaatgcttgatga |
54616078 |
T |
|
| Q |
175 |
aattattaactatgttcagtctcttcaaagacaagtcgaggt |
216 |
Q |
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||| ||||||||||||||||||||||||| |||||| ||||| |
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| T |
54616079 |
aatcattaactatgttcagtctcttcaaaaacaagttgaggt |
54616120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 54616190 - 54616250
Alignment:
| Q |
306 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
366 |
Q |
| |
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||||||||||||||||||||||||| |||| || ||||| ||||| ||||| |||||||| |
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| T |
54616190 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
54616250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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