View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_19 (Length: 388)
Name: NF12040_high_19
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 94 - 373
Target Start/End: Original strand, 37642663 - 37642959
Alignment:
| Q |
94 |
ttcttaatttaaaggtgccaaaaagcttatgtcatactttatgtgcccaaccgatgaccgaaagaaacaccatgagcgcggt----------------tt |
177 |
Q |
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| T |
37642663 |
ttcttaatttaaaggtgccaaaaagcttatgtcatactttatgtgcccaaccgatgagcgaaagaaacaccatgagcgcggtagaaggctatgttggttt |
37642762 |
T |
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| Q |
178 |
agctaataattgtgtgtcactatgatagaatattagaaagcattaaaatcataaaactgatttaacctaatgtggcttatccatgaactttggtgcatta |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37642763 |
agctaataattgtgtgtcactatgatagaatattagaaagcattaaaatcataaaactgatttaacctaatgcggcttatccatgaactttggtgcattg |
37642862 |
T |
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| Q |
278 |
aagtttgatacacggtcttttattctctagagttagaaataaatacgaatcaaaacctatagtacattacattgaccgtatc-aatgattatgatgt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
37642863 |
gagtttgatacacggtcttttattctctagagttagaaataaatacgaatcaaaacctatagtacattacattgaccttatcaaatgattatgatgt |
37642959 |
T |
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