View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_23 (Length: 363)
Name: NF12040_high_23
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 14596856 - 14597047
Alignment:
| Q |
1 |
ttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596856 |
ttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtg |
14596955 |
T |
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| Q |
101 |
catgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
192 |
Q |
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| T |
14596956 |
catgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 14611714 - 14611523
Alignment:
| Q |
1 |
ttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
14611714 |
ttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacggttgtg |
14611615 |
T |
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| Q |
101 |
catgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
192 |
Q |
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| T |
14611614 |
catgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 14597098 - 14597212
Alignment:
| Q |
243 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
343 |
gacacaggttctgct |
357 |
Q |
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||||||| ||||||| |
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| T |
14597198 |
gacacagattctgct |
14597212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
45 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
144 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
145 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
186 |
Q |
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||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 15417158 - 15417259
Alignment:
| Q |
86 |
ccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatac |
185 |
Q |
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||||||||| |||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || |||||| |
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| T |
15417158 |
ccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcatac |
15417257 |
T |
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| Q |
186 |
ct |
187 |
Q |
| |
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|| |
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| T |
15417258 |
ct |
15417259 |
T |
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