View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12040_high_25 (Length: 362)
Name: NF12040_high_25
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_25 |
 | |
|
| [»] scaffold0665 (1 HSPs) |
| | |
|
| [»] scaffold0440 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 26063676 - 26064018
Alignment:
| Q |
1 |
aatcagcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063676 |
aatcagcagcaaatttggtggccgatttgtaaattcggttgccgaattctgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
26063775 |
T |
|
| Q |
101 |
aatcacaatgaatatccttaaaattacatgaaaaatgtcagagtgtcatcaggcgtgacgtggattcatgcttttatagtatgagacgtagtaaccgttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063776 |
aatcacaatgaatatccttaaaattacatgaaaaatgtcagagtgtcatcaggcgtgacgtcgattcatgcttttatagtatgagacgtagtaaccgttc |
26063875 |
T |
|
| Q |
201 |
gctagaaacacaacacaaattaagtgcggaaagccattagagatcaattagatgaccatgatgtgacgagagagcgcgcctatgcggcaacatatacagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
26063876 |
gctagaaacacaacacaaattaagtgcggaaagccgttagagatcaattagatgaccatgatgtgac--gagagcgcgcctatgcggcaacatatatagg |
26063973 |
T |
|
| Q |
301 |
aggtccactgtggaactctgctacccaaggattcagggttaatag |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26063974 |
aggtccactgtggaactctgctacccaaggattcagggttaatag |
26064018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 648186 - 648326
Alignment:
| Q |
1 |
aatcagcagcaaat-tcggtggccgatttgtaaaa-tcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctcca |
98 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
648186 |
aatcagcagcaaaaatcggtggccgatttgtaaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactcca |
648284 |
T |
|
| Q |
99 |
tgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
648285 |
tgaatgacaataaataacccctaaaattacatgaaaaatgtc |
648326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 651460 - 651600
Alignment:
| Q |
1 |
aatcagcagcaaat-tcggtggccgatttgtaaaa-tcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctcca |
98 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
651460 |
aatcagcagcaaaaatcggtggccgatttgtaaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactcca |
651558 |
T |
|
| Q |
99 |
tgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
651559 |
tgaattacaataaataacccctaaaattacatgaaaaatgtc |
651600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 12171226 - 12171145
Alignment:
| Q |
59 |
caaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
12171226 |
caaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
12171145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 1837715 - 1837577
Alignment:
| Q |
1 |
aatcagcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1837715 |
aatcagcagcaaattcgttggccgatttgtaaaatcggtggccgaattctgacttcttcaaacttcaatttcttgtttttttgtagcttgcagctccatg |
1837616 |
T |
|
| Q |
101 |
aatcacaatgaatatccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1837615 |
aatcacaatgaatatccttaaaattacatgaaaaatgtc |
1837577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 32705292 - 32705416
Alignment:
| Q |
15 |
tcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat- |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
32705292 |
tcgggggccgatttgtaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccatgaattacaataaata |
32705390 |
T |
|
| Q |
114 |
atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
32705391 |
acccctaaaattacatgaaaaatgtc |
32705416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 14789861 - 14789724
Alignment:
| Q |
1 |
aatcagcagcaaat-tcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccat |
99 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14789861 |
aatcagcagcaaaaatcgggggccgatttgtaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccat |
14789763 |
T |
|
| Q |
100 |
gaatcacaatgaatatcct-taaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||||| || |||| || ||||||||||||||||||||| |
|
|
| T |
14789762 |
gaatca--ataaataacccctaaaattacatgaaaaatgtc |
14789724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 14794874 - 14794750
Alignment:
| Q |
15 |
tcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat- |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
14794874 |
tcgggggccgatttgtaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccatgaattacaataaata |
14794776 |
T |
|
| Q |
114 |
atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
| || ||||||||||||| ||||||| |
|
|
| T |
14794775 |
acccctaaaattacatgagaaatgtc |
14794750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 15537504 - 15537424
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
15537504 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
15537424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 15534292 - 15534212
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
15534292 |
aaacttcaatttgttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
15534212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 19665727 - 19665807
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
19665727 |
aaacttcaatttcttcttcttttgtagcttggaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
19665807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 36326161 - 36326023
Alignment:
| Q |
1 |
aatcagcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36326161 |
aatcagcagcaaattcggtggccggtttgtaaaatgtgtggccgaattctgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
36326062 |
T |
|
| Q |
101 |
aatcacaatgaatatccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36326061 |
aatcacaatgaatatccttaaaattacatgaaaaatgtc |
36326023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 4843033 - 4843146
Alignment:
| Q |
26 |
tttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaat |
124 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||| | || |||||| |
|
|
| T |
4843033 |
tttgtaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccattaattacaataaataacccctaaaat |
4843131 |
T |
|
| Q |
125 |
tacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4843132 |
tacatgaaaaatgtc |
4843146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 31527624 - 31527528
Alignment:
| Q |
6 |
gcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaat |
103 |
Q |
| |
|
|||||||| |||||||||||| | || ||||||||||||| ||| | | |||||||||||| |||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
31527624 |
gcagcaaaatcggtggccgatctatataatcggtggccga-tttccaatacttcaaacttcattttctttgtcttttgcagcttgcagcttcatgaat |
31527528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 31625728 - 31625648
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||| |||||||||||| ||||||| | || ||||||||||| ||||||||| |
|
|
| T |
31625728 |
aaacttcattttctttgtcttttgtggcttgcaactccatgaatcaaaatgaataacccctaaaattacatcaaaaatgtc |
31625648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32506859 - 32506997
Alignment:
| Q |
1 |
aatcagcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32506859 |
aatcagcagcaaattcggaggcctgtttgtaaaatcggtggccgaattctgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
32506958 |
T |
|
| Q |
101 |
aatcacaatgaatatccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32506959 |
aatcacaatgaatatccttaaaattacataaaaaatgtc |
32506997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 13495306 - 13495181
Alignment:
| Q |
15 |
tcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat- |
113 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
13495306 |
tcgggggccgatttgtaaaatcgggggccgaattctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccatgaataacaataaata |
13495207 |
T |
|
| Q |
114 |
atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
| || ||||||||||||||||||||| |
|
|
| T |
13495206 |
acccctaaaattacatgaaaaatgtc |
13495181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 13492521 - 13492390
Alignment:
| Q |
5 |
agcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatc |
104 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
13492521 |
agcagcaaattcgg-ggctgatttgtaaaatcgggggccgaactctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccataaatt |
13492423 |
T |
|
| Q |
105 |
acaatgaat-atccttaaaattacatgaaaaat |
136 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||| |
|
|
| T |
13492422 |
acaataaataatccctaaaattacatgaaaaat |
13492390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 10759373 - 10759265
Alignment:
| Q |
31 |
aaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacat |
129 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||| |
|
|
| T |
10759373 |
aaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacat |
10759275 |
T |
|
| Q |
130 |
gaaaaatgtc |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
10759274 |
gaaaaatgtc |
10759265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 1935866 - 1935732
Alignment:
| Q |
3 |
tcagcagcaaattcggtggccgatttgtaaaat-cggtggccgaattttgacttcttcaaa-cttcaatttcttgttcttttgtagcttgcagctccatg |
100 |
Q |
| |
|
||||||||||||||| ||||||| | ||| || ||||||| |||||||| | ||||||| || |||||| ||| | |||||| ||||||||||||||| |
|
|
| T |
1935866 |
tcagcagcaaattcgatggccgaatggtatgattcggtggcttaattttgaat-cttcaaaactccaattt-ttgctattttgtggcttgcagctccatg |
1935769 |
T |
|
| Q |
101 |
aatcacaatgaatatc-ctt-aaaattacatgaaaaa |
135 |
Q |
| |
|
||| |||||||||||| ||| ||||||||||| |||| |
|
|
| T |
1935768 |
aattacaatgaatatcacttaaaaattacatggaaaa |
1935732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 14617431 - 14617569
Alignment:
| Q |
1 |
aatcagcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14617431 |
aatcaacagcaaattcgggggccgatttgtaaaatcggcggccgaattctgacttcatcaaacttcaatttcttgttcttttgtagcttgcagctccatg |
14617530 |
T |
|
| Q |
101 |
aatcacaatgaatatccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14617531 |
aatcacaatgaatatccttaaaattatatgaaaaatgtc |
14617569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 34405100 - 34404992
Alignment:
| Q |
31 |
aaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacat |
129 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||| ||| | || |||||||||| |
|
|
| T |
34405100 |
aaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttctgtagcttgcaactcaatgaattacaataaataaccccaaaaattacat |
34405002 |
T |
|
| Q |
130 |
gaaaaatgtc |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
34405001 |
gaaaaatgtc |
34404992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 26713385 - 26713465
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
26713385 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
26713465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 26983123 - 26983203
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
26983123 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
26983203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 33574331 - 33574254
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaat |
136 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||| ||||| ||| | ||||||||||||||||||||| |
|
|
| T |
33574331 |
aaactttaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccttaaaattacatgaaaaat |
33574254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 15533211 - 15533343
Alignment:
| Q |
6 |
gcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatca |
105 |
Q |
| |
|
|||||||| |||||||||||| | || ||||||||||||| ||| | | |||||||||||| |||||| |||||||| |||||||||| ||||||| |
|
|
| T |
15533211 |
gcagcaaaatcggtggccgatctatataatcggtggccga-tttccaatacttcaaacttcattttctttttcttttgcggcttgcagcttcatgaattc |
15533309 |
T |
|
| Q |
106 |
caatgaata--tccttaaaattacatgaaaaatg |
137 |
Q |
| |
|
|||| || | || ||||||||||||||||||| |
|
|
| T |
15533310 |
caataaaaaaccccctaaaattacatgaaaaatg |
15533343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 15543393 - 15543525
Alignment:
| Q |
6 |
gcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatca |
105 |
Q |
| |
|
|||||||| |||||||||||| | || |||||||||||| |||| | | |||||||||||| |||||| ||||||| |||||||||| ||||||| |
|
|
| T |
15543393 |
gcagcaaaatcggtggccgatctatataatcggtggccg-atttccaatacttcaaacttcattttctttgtcttttgcggcttgcagcttcatgaattc |
15543491 |
T |
|
| Q |
106 |
caatgaata--tccttaaaattacatgaaaaatg |
137 |
Q |
| |
|
|||| || | || ||||||||||||||||||| |
|
|
| T |
15543492 |
caataaaaaaccccctaaaattacatgaaaaatg |
15543525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 17867356 - 17867495
Alignment:
| Q |
1 |
aatcagcagcaaat-tcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccat |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17867356 |
aatcagcagcaaaaatcggtggccgatttgtaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccat |
17867454 |
T |
|
| Q |
100 |
gaatcacaatgaatatc-cttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||| ||||| |||| | | ||||||||||||||||||||| |
|
|
| T |
17867455 |
gaattacaataaataactcctaaaattacatgaaaaatgtc |
17867495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 17864108 - 17864216
Alignment:
| Q |
31 |
aaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacat |
129 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||| |
|
|
| T |
17864108 |
aaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacat |
17864206 |
T |
|
| Q |
130 |
gaaaaatgtc |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
17864207 |
gaaaaatgtc |
17864216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 294136 - 294057
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaatatccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
294136 |
aaacttcaatttcttgttcttttgtagctgggagctccatgaatcacaatgaatatcctcaaaattacatgaaaaatgtc |
294057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 35773594 - 35773674
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
35773594 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
35773674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 6966351 - 6966271
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || |||||||||||||||||||| |
|
|
| T |
6966351 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataaccccaaaaattacatgaaaaatgtc |
6966271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 24782646 - 24782567
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgt |
138 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || | |||| ||||||||||||| |
|
|
| T |
24782646 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctcaaataacatgaaaaatgt |
24782567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 1309896 - 1309981
Alignment:
| Q |
52 |
acttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaatatc-cttaaaattacatgaaaaatg |
137 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||| ||||||| |||||| ||| |||||||||||| | |||||||| |||||||||| |
|
|
| T |
1309896 |
acttcttgaaacttcagattcttgt-cttttgtggcttgcaactccataaattacaatgaatatcacctaaaattatatgaaaaatg |
1309981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 33312234 - 33312163
Alignment:
| Q |
31 |
aaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaat |
103 |
Q |
| |
|
||||||||||||||| ||| | | |||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
33312234 |
aaaatcggtggccga-tttccaatacttcaaacttcattttctttgtcttttgtggcttgcagctccatgaat |
33312163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 23760619 - 23760751
Alignment:
| Q |
6 |
gcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatca |
105 |
Q |
| |
|
|||||||| |||||||||||| | | ||||||||||||| ||| | | |||||||||||| |||||| ||||||| |||||||||| ||||||| |
|
|
| T |
23760619 |
gcagcaaaatcggtggccgatctatctaatcggtggccga-tttccaatacttcaaacttcattttctttgtcttttgcggcttgcagcttcatgaattc |
23760717 |
T |
|
| Q |
106 |
caatgaata--tccttaaaattacatgaaaaatg |
137 |
Q |
| |
|
|||| || | || ||||||||||||||||||| |
|
|
| T |
23760718 |
caataaaaaaccccctaaaattacatgaaaaatg |
23760751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 647 - 752
Alignment:
| Q |
1 |
aatcagcagcaaat--tcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctcca |
98 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
647 |
aatcagcagcaaaaaatcgggggccgatttgtaaaatcggtggccga-ttctgacttcttcaaacttcaatttcttgttcttttgtagcttgcaactcca |
745 |
T |
|
| Q |
99 |
tgaatca |
105 |
Q |
| |
|
||||||| |
|
|
| T |
746 |
tgaatca |
752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 9190 - 9110
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
9190 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
9110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 11139613 - 11139693
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
11139613 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
11139693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 22627377 - 22627457
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
22627377 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
22627457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 39564528 - 39564608
Alignment:
| Q |
60 |
aaacttcaatttcttgttcttttgtagcttgcagctccatgaatcacaatgaat-atccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
39564528 |
aaacttcaatttcttcttcttttgtagcttgcaactccatgaattacaataaataacccctaaaattacatgaaaaatgtc |
39564608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 1097294 - 1097355
Alignment:
| Q |
79 |
ttttgtagcttgcagctccatgaatcacaatgaatatcc-ttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||||| || |||||||| |||||||| ||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
1097294 |
ttttgtggcctgcagctctatgaatcataataaatatcccttaaaattacataaaaaatgtc |
1097355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 13105 - 13239
Alignment:
| Q |
6 |
gcagcaaattcggtggccgatttgtaaaatcggtggccgaattttgacttcttcaaacttcaatttcttgttcttttgtagcttgcagctccatgaatca |
105 |
Q |
| |
|
|||||||| |||| ||||||||| | |||| |||||||| ||| | | |||||||||||| |||||| |||||||| |||||||||| ||||||| |
|
|
| T |
13105 |
gcagcaaaatcgggggccgatttatccaatcagtggccga-tttccaatacttcaaacttcattttctttgtcttttgtggcttgcagcttcatgaattc |
13203 |
T |
|
| Q |
106 |
caat--gaatatccttaaaattacatgaaaaatgtc |
139 |
Q |
| |
|
|||| ||| || ||||||||||||||||||||| |
|
|
| T |
13204 |
caataagaaaccccctaaaattacatgaaaaatgtc |
13239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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