View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12040_high_29 (Length: 313)

Name: NF12040_high_29
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12040_high_29
NF12040_high_29
[»] chr5 (21 HSPs)
chr5 (49-303)||(5162055-5162309)
chr5 (242-303)||(32697712-32697773)
chr5 (244-303)||(28289685-28289744)
chr5 (246-303)||(14340896-14340953)
chr5 (236-294)||(41834554-41834612)
chr5 (239-287)||(8419122-8419170)
chr5 (244-303)||(16752583-16752642)
chr5 (244-303)||(21371182-21371241)
chr5 (246-288)||(4966819-4966861)
chr5 (244-294)||(15029804-15029854)
chr5 (244-294)||(28290139-28290189)
chr5 (247-288)||(38900648-38900689)
chr5 (244-303)||(4967257-4967316)
chr5 (244-303)||(15115578-15115637)
chr5 (244-303)||(18150210-18150269)
chr5 (244-293)||(22651807-22651856)
chr5 (242-294)||(10721785-10721837)
chr5 (245-293)||(16753066-16753114)
chr5 (244-288)||(17260721-17260765)
chr5 (244-280)||(25974219-25974255)
chr5 (244-296)||(27307062-27307114)
[»] chr4 (41 HSPs)
chr4 (244-303)||(12593509-12593568)
chr4 (244-303)||(34807117-34807176)
chr4 (244-303)||(46737141-46737200)
chr4 (245-303)||(34789869-34789927)
chr4 (245-303)||(35644048-35644106)
chr4 (245-303)||(54440573-54440631)
chr4 (246-298)||(14439831-14439883)
chr4 (244-303)||(19528870-19528929)
chr4 (244-303)||(33689830-33689889)
chr4 (244-303)||(55677444-55677503)
chr4 (244-294)||(21034732-21034782)
chr4 (246-303)||(41608377-41608434)
chr4 (245-294)||(44219377-44219426)
chr4 (244-303)||(41608901-41608960)
chr4 (245-291)||(24851964-24852010)
chr4 (239-297)||(26974279-26974337)
chr4 (246-303)||(36168332-36168389)
chr4 (244-303)||(45838548-45838607)
chr4 (244-298)||(12593025-12593079)
chr4 (244-294)||(21034236-21034286)
chr4 (244-294)||(28465576-28465626)
chr4 (244-294)||(34789383-34789433)
chr4 (246-288)||(40160591-40160633)
chr4 (240-289)||(37336648-37336697)
chr4 (244-292)||(12930805-12930853)
chr4 (244-296)||(24335762-24335814)
chr4 (244-296)||(51309998-51310050)
chr4 (242-296)||(23986519-23986573)
chr4 (244-294)||(25938165-25938215)
chr4 (245-291)||(28465083-28465129)
chr4 (244-294)||(35193797-35193847)
chr4 (238-296)||(44890512-44890570)
chr4 (245-291)||(51641328-51641374)
chr4 (244-294)||(56077819-56077869)
chr4 (245-294)||(2118295-2118344)
chr4 (246-303)||(6617148-6617205)
chr4 (244-293)||(24851317-24851366)
chr4 (246-303)||(26974731-26974788)
chr4 (246-294)||(229654-229702)
chr4 (248-296)||(31297182-31297230)
chr4 (244-288)||(36168832-36168876)
[»] chr2 (42 HSPs)
chr2 (244-303)||(25336086-25336145)
chr2 (244-303)||(4355756-4355815)
chr2 (244-303)||(6949930-6949989)
chr2 (244-303)||(20128223-20128282)
chr2 (236-303)||(33920605-33920672)
chr2 (244-303)||(38007951-38008010)
chr2 (246-303)||(9330281-9330338)
chr2 (247-303)||(16175836-16175892)
chr2 (243-303)||(16953420-16953480)
chr2 (244-303)||(32418160-32418219)
chr2 (246-303)||(43160012-43160069)
chr2 (244-303)||(649528-649587)
chr2 (244-303)||(42192729-42192788)
chr2 (244-303)||(43216195-43216254)
chr2 (246-296)||(3824201-3824251)
chr2 (244-298)||(44220136-44220190)
chr2 (246-291)||(3822924-3822969)
chr2 (244-297)||(5560052-5560105)
chr2 (246-291)||(5561038-5561083)
chr2 (246-303)||(15550676-15550733)
chr2 (239-294)||(38008446-38008501)
chr2 (244-303)||(42192241-42192300)
chr2 (244-294)||(62958-63008)
chr2 (244-294)||(11539638-11539688)
chr2 (244-294)||(33921107-33921157)
chr2 (245-294)||(649832-649881)
chr2 (244-297)||(4356248-4356301)
chr2 (239-296)||(31797270-31797327)
chr2 (239-294)||(4809374-4809429)
chr2 (244-303)||(11540124-11540183)
chr2 (239-294)||(20127732-20127787)
chr2 (244-294)||(1978603-1978653)
chr2 (236-294)||(6949444-6949502)
chr2 (244-294)||(14942341-14942391)
chr2 (244-294)||(24140169-24140219)
chr2 (244-294)||(28143524-28143574)
chr2 (246-291)||(4808882-4808927)
chr2 (246-294)||(63459-63507)
chr2 (246-294)||(8425358-8425406)
chr2 (244-288)||(16952936-16952980)
chr2 (244-288)||(17060907-17060951)
chr2 (244-284)||(44219645-44219685)
[»] chr8 (27 HSPs)
chr8 (242-303)||(28254912-28254973)
chr8 (244-303)||(599533-599592)
chr8 (244-303)||(15255854-15255913)
chr8 (246-303)||(18050077-18050134)
chr8 (244-303)||(9796727-9796786)
chr8 (244-303)||(16578109-16578168)
chr8 (246-303)||(28877375-28877432)
chr8 (244-293)||(35427308-35427357)
chr8 (244-303)||(6115597-6115656)
chr8 (244-303)||(34799569-34799628)
chr8 (244-303)||(41260747-41260806)
chr8 (243-293)||(42035772-42035822)
chr8 (244-297)||(599990-600043)
chr8 (244-293)||(18674149-18674198)
chr8 (244-288)||(5730818-5730862)
chr8 (246-294)||(18428257-18428305)
chr8 (246-293)||(9797223-9797270)
chr8 (237-303)||(7910610-7910676)
chr8 (244-294)||(15256326-15256376)
chr8 (244-294)||(41260272-41260322)
chr8 (244-293)||(7911112-7911161)
chr8 (244-293)||(16578592-16578641)
chr8 (248-293)||(18049595-18049640)
chr8 (245-294)||(28254427-28254476)
chr8 (246-294)||(35426845-35426893)
chr8 (244-288)||(35693869-35693913)
chr8 (246-294)||(35694373-35694421)
[»] chr6 (15 HSPs)
chr6 (239-303)||(31574211-31574275)
chr6 (244-303)||(31073628-31073687)
chr6 (246-297)||(25468852-25468903)
chr6 (243-294)||(30250721-30250772)
chr6 (244-290)||(5120968-5121014)
chr6 (244-303)||(28636293-28636352)
chr6 (244-296)||(32836489-32836541)
chr6 (245-296)||(18297682-18297733)
chr6 (244-294)||(22534219-22534269)
chr6 (244-303)||(29891081-29891140)
chr6 (242-293)||(31470811-31470862)
chr6 (244-294)||(25472508-25472558)
chr6 (239-293)||(35163683-35163737)
chr6 (244-296)||(10900422-10900474)
chr6 (244-288)||(31573721-31573765)
[»] chr3 (55 HSPs)
chr3 (239-303)||(46013418-46013482)
chr3 (244-294)||(51827958-51828008)
chr3 (244-292)||(14654686-14654734)
chr3 (244-303)||(41998714-41998773)
chr3 (244-303)||(49720372-49720431)
chr3 (244-303)||(49952032-49952091)
chr3 (238-303)||(51828534-51828599)
chr3 (244-303)||(39010076-39010135)
chr3 (244-303)||(44676473-44676532)
chr3 (244-303)||(47431697-47431756)
chr3 (244-303)||(52375328-52375387)
chr3 (244-303)||(52375817-52375876)
chr3 (244-294)||(43678779-43678829)
chr3 (244-294)||(55390092-55390142)
chr3 (246-303)||(16689361-16689418)
chr3 (244-293)||(27200187-27200236)
chr3 (246-303)||(32730392-32730449)
chr3 (246-303)||(40838655-40838712)
chr3 (246-294)||(22370599-22370647)
chr3 (244-296)||(49407797-49407849)
chr3 (239-294)||(330331-330386)
chr3 (245-296)||(36701589-36701640)
chr3 (244-303)||(40275094-40275153)
chr3 (246-297)||(44676964-44677015)
chr3 (244-294)||(2051296-2051346)
chr3 (236-294)||(49951539-49951597)
chr3 (244-290)||(51472856-51472902)
chr3 (245-303)||(52237303-52237361)
chr3 (244-297)||(16701284-16701337)
chr3 (245-294)||(30513724-30513773)
chr3 (249-294)||(34105145-34105190)
chr3 (244-289)||(40275593-40275638)
chr3 (244-297)||(43678296-43678349)
chr3 (244-297)||(49720853-49720906)
chr3 (244-297)||(51828450-51828503)
chr3 (239-303)||(25534886-25534950)
chr3 (244-288)||(36701107-36701151)
chr3 (242-294)||(37075685-37075737)
chr3 (247-294)||(329850-329897)
chr3 (239-294)||(23644458-23644513)
chr3 (246-296)||(5136983-5137033)
chr3 (244-294)||(30104483-30104533)
chr3 (244-294)||(38535310-38535360)
chr3 (244-290)||(38535794-38535840)
chr3 (244-294)||(41998230-41998280)
chr3 (245-303)||(52236818-52236876)
chr3 (245-294)||(32730884-32730933)
chr3 (244-293)||(33412650-33412699)
chr3 (246-303)||(40839138-40839195)
chr3 (244-293)||(49408277-49408326)
chr3 (246-294)||(25612471-25612519)
chr3 (244-296)||(25853235-25853287)
chr3 (246-294)||(26837363-26837411)
chr3 (244-284)||(50901032-50901072)
chr3 (246-294)||(51473351-51473399)
[»] chr7 (38 HSPs)
chr7 (244-303)||(27245204-27245263)
chr7 (242-303)||(39388754-39388815)
chr7 (244-303)||(24929794-24929853)
chr7 (244-303)||(48247588-48247647)
chr7 (246-303)||(26026320-26026377)
chr7 (244-303)||(5333881-5333940)
chr7 (244-291)||(5746138-5746185)
chr7 (244-303)||(7732489-7732548)
chr7 (244-303)||(9181898-9181957)
chr7 (244-291)||(16081797-16081844)
chr7 (244-303)||(25637198-25637257)
chr7 (244-303)||(26048432-26048491)
chr7 (244-298)||(786783-786837)
chr7 (241-303)||(28687985-28688046)
chr7 (249-303)||(35161288-35161342)
chr7 (244-297)||(16917714-16917767)
chr7 (246-294)||(5184431-5184479)
chr7 (246-297)||(5745642-5745693)
chr7 (244-294)||(15712366-15712416)
chr7 (244-294)||(34595267-34595317)
chr7 (246-300)||(40669697-40669751)
chr7 (239-288)||(7732988-7733037)
chr7 (245-294)||(9181534-9181583)
chr7 (244-293)||(39136687-39136736)
chr7 (246-294)||(25637693-25637741)
chr7 (245-288)||(5334320-5334363)
chr7 (246-293)||(11973898-11973945)
chr7 (245-288)||(34594585-34594628)
chr7 (250-297)||(35160660-35160707)
chr7 (245-303)||(14311317-14311375)
chr7 (237-283)||(16081293-16081339)
chr7 (244-278)||(45815345-45815379)
chr7 (244-294)||(48248087-48248137)
chr7 (246-303)||(787272-787329)
chr7 (244-293)||(2758194-2758243)
chr7 (244-293)||(28687594-28687643)
chr7 (244-293)||(49064035-49064084)
chr7 (246-294)||(35578902-35578950)
[»] chr1 (35 HSPs)
chr1 (244-303)||(29438931-29438990)
chr1 (244-303)||(16298683-16298742)
chr1 (245-291)||(10278550-10278596)
chr1 (245-303)||(50304441-50304499)
chr1 (244-297)||(1837506-1837559)
chr1 (246-303)||(17641855-17641912)
chr1 (244-296)||(44802664-44802716)
chr1 (244-294)||(23340184-23340234)
chr1 (245-303)||(44582059-44582117)
chr1 (244-293)||(34555380-34555429)
chr1 (246-303)||(37421163-37421220)
chr1 (244-288)||(30786772-30786816)
chr1 (244-303)||(444037-444096)
chr1 (248-291)||(4080026-4080069)
chr1 (246-293)||(45048158-45048205)
chr1 (244-294)||(9992650-9992700)
chr1 (244-298)||(44954717-44954771)
chr1 (244-293)||(37505068-37505117)
chr1 (246-303)||(45048621-45048678)
chr1 (244-294)||(18984613-18984663)
chr1 (244-294)||(39843519-39843569)
chr1 (246-296)||(50419393-50419443)
chr1 (244-294)||(50419755-50419805)
chr1 (244-294)||(50926736-50926786)
chr1 (247-296)||(25274760-25274809)
chr1 (245-294)||(34555877-34555926)
chr1 (244-297)||(37505559-37505612)
chr1 (246-303)||(39485068-39485125)
chr1 (244-293)||(52233739-52233788)
chr1 (245-297)||(2867913-2867965)
chr1 (242-294)||(5539815-5539867)
chr1 (244-296)||(17088632-17088684)
chr1 (245-297)||(44582551-44582603)
chr1 (246-294)||(50305280-50305328)
chr1 (244-288)||(52235169-52235213)
[»] scaffold0097 (2 HSPs)
scaffold0097 (244-294)||(46763-46813)
scaffold0097 (239-293)||(46262-46316)
[»] scaffold0712 (1 HSPs)
scaffold0712 (246-303)||(6882-6939)
[»] scaffold0709 (1 HSPs)
scaffold0709 (246-303)||(6900-6957)
[»] scaffold0007 (3 HSPs)
scaffold0007 (244-294)||(210832-210882)
scaffold0007 (245-294)||(205862-205911)
scaffold0007 (246-286)||(204931-204971)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 49 - 303
Target Start/End: Complemental strand, 5162309 - 5162055
Alignment:
Q  49 actcacactattgtgacttgggtttatacaattacaatgacgttgttggtttgcactgactttgcatgaagtgtgtttccaataatcaataaattaaact 148  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5162309 actcacactattgtgacttgggtttatacaattacaatgaggttggtggtttgcactgactttgcatgaagtgtgtttctaataatcaataaattaaact 5162210  T
Q  149 aggtgtcgtgaaaagggaaggacacgtgttagttgctcctcatccnnnnnnnttaggagaaaacattcggaacaaacaaacattgttaataaaatgctta 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||| |||||    
T  5162209 aggtgtcgtgaaaagggaaggacacgtgttagttgctcctcatccaaaaaaattaagagaaaacattcggaacaaacaaacattgttaataaaaggctta 5162110  T
Q  249 attacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||| ||||  |||||||||||| ||||||||| || ||| ||||||| ||||    
T  5162109 attacattttttatccttgcattttgaccaactcatgagattagtcatacctctt 5162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 32697773 - 32697712
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||    
T  32697773 atgcttaattacacttttggtcattgcattttgaccaactcacgaaattggtcctacctctt 32697712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 28289685 - 28289744
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||    
T  28289685 gcttaattacacttttgatccttgcattttgaccaactcacgaaattagtcatacctctt 28289744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 14340953 - 14340896
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  14340953 ttaattacatttttggtacttgcattttgaccaactcacgaaattggtcatacatctt 14340896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 41834612 - 41834554
Alignment:
Q  236 aataaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||| |||||||||||||||||||||| ||||||| |||| ||||||||| |||||    
T  41834612 aataaaaggcttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtc 41834554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 8419170 - 8419122
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaa 287  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  8419170 aaaatgcttaattacacttttggtcctaccattttgaccaactcacgaa 8419122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 16752583 - 16752642
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||| || |||| ||||||    
T  16752583 gcttaattacacttttggtccctgcattttgaccagctcacgaaaatgatcatgcttctt 16752642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 21371241 - 21371182
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| |||||||||||| |||||||||  ||||||||| ||| ||||    
T  21371241 gcttaattacacttttgatccttgcattttgaccaactcataaaattggtcctacctctt 21371182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 4966819 - 4966861
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  4966819 ttaattacacttttggtcctcgcattttgaccaactcacgaaa 4966861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 15029854 - 15029804
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  15029854 gcttaattacacttttggtcctcccattttgaccaactcacgaaaatggtc 15029804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 28290189 - 28290139
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  28290189 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 28290139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 38900648 - 38900689
Alignment:
Q  247 taattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  38900648 taattacacttttggtcctcgcattttgaccaactcacgaaa 38900689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 4967316 - 4967257
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||  |||||| |||||||||| ||| ||||| ||| ||||    
T  4967316 gcttaattacacttttggtcctcacattttgaccaactcacaaaaatggtcttacctctt 4967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 15115637 - 15115578
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| ||||  |||||| |||||||||||||| ||||| ||| ||||    
T  15115637 gcttaattacacttttgatcctcacattttgaccaactcacgaaaatggtcctacctctt 15115578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 18150269 - 18150210
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||| || |||||| ||||| || ||||||||||||||||| ||| ||||    
T  18150269 gcttaattacacttgtgatccttgtattttgacaaactcacgaaattggtcctacctctt 18150210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 22651856 - 22651807
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||| ||||| ||||||| |||| ||||||||| ||||    
T  22651856 gcttaattacactttttgtcctcgcattttgaccagctcacgaaaatggt 22651807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 10721785 - 10721837
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||| ||||||||||  |||||| |||| ||||||||| |||||    
T  10721785 atgcttaattacatttttggtcctcacattttgaccagctcacgaaaatggtc 10721837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 16753114 - 16753066
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||| |||||||| | ||||||| |||||||||||||| ||||    
T  16753114 cttaattacatttttggtcatcgcattttgaccaactcacgaaaatggt 16753066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 17260765 - 17260721
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    |||||||| ||||||||||||| ||||||| ||||| ||||||||    
T  17260765 gcttaattgcacttttggtcctcgcattttgaccaattcacgaaa 17260721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 25974255 - 25974219
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaac 280  Q
    |||||||||||||||||||||| |||||| |||||||    
T  25974255 gcttaattacacttttggtcctcgcatttaaaccaac 25974219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 27307062 - 27307114
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||||||||||||||| || ||||||| ||||||| | |||| |||||||    
T  27307062 gcttaattacacttttggttctcgcattttgaccaacttatgaaaatggtcat 27307114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 12593568 - 12593509
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  12593568 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcatacctctt 12593509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 34807117 - 34807176
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||    
T  34807117 gcttaattacacttttggtccttgcattttgatcaactcacgaaattggtcatacctctt 34807176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 46737200 - 46737141
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  46737200 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 46737141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 34789927 - 34789869
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  34789927 cttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 34789869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 35644106 - 35644048
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  35644106 cttaattacacttttggtccttgcattttgaccaactcacgaaataggtcatacctctt 35644048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 54440573 - 54440631
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  54440573 cttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 54440631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 14439831 - 14439883
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatac 298  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  14439831 ttaattacatttttggtccttgcattttgaccaactcacgaaattggtcatac 14439883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 19528870 - 19528929
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||    
T  19528870 gcttaattacacttttggtccttgcattttgaccaattcacgaaattggtcctacctctt 19528929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 33689830 - 33689889
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||    
T  33689830 gcttaattacacttttggtccttgcattttgaccaactcacaaaattggtcctacctctt 33689889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 55677503 - 55677444
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  55677503 gcttaattacacttttggtccttgtattttgaccaactcacgaaattggtcctacctctt 55677444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 21034782 - 21034732
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  21034782 gcttaattacaattttggtccttgcattttgaccaactcacgaaattggtc 21034732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 41608377 - 41608434
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||    
T  41608377 ttaattacacttttggtccttgcattttgatcaactcatgaaattggtcatacctctt 41608434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 44219377 - 44219426
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  44219377 cttaattacacttttggtcctcgtattttaaccaactcacgaaattggtc 44219426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 41608960 - 41608901
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||||| ||| ||||    
T  41608960 gcttaattacacttttggtcctaccattttgaccaactcacgaaattggtcctacctctt 41608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 24852010 - 24851964
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    
T  24852010 cttaattatacttttggtccttgcattttgaccaactcacgaaattg 24851964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 26974279 - 26974337
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    |||| ||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||    
T  26974279 aaaaggcttaattacacttttggtcctaccattttaacaaactcacgaaaatggtcata 26974337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 36168332 - 36168389
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||| ||| ||||    
T  36168332 ttaattacacttttgctccttgcattttgaccaacccacgaaattggtcttacctctt 36168389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 45838548 - 45838607
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||    
T  45838548 gcttatttacacttttggtccttgtattttgaccaactcacgtaattggtcctacctctt 45838607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 12593025 - 12593079
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatac 298  Q
    ||||||||||||||||||||||  || ||| |||||||||||||| |||||||||    
T  12593025 gcttaattacacttttggtcctaccagtttgaccaactcacgaaaatggtcatac 12593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 21034236 - 21034286
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  21034236 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 21034286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 28465626 - 28465576
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  28465626 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 28465576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 34789383 - 34789433
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  34789383 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 34789433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 40160633 - 40160591
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  40160633 ttaattacatttttggtccttgcattttgaccaactcacgaaa 40160591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 37336697 - 37336648
Alignment:
Q  240 aaatgcttaattacacttttggtccttgcattttaaccaactcacgaaat 289  Q
    ||||||||||||  | |||||||||| |||||||||||||||||||||||    
T  37336697 aaatgcttaattgtatttttggtcctcgcattttaaccaactcacgaaat 37336648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 12930805 - 12930853
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattgg 292  Q
    |||||||| ||||||||||||   |||||||||||||||||||||||||    
T  12930805 gcttaattgcacttttggtccgcacattttaaccaactcacgaaattgg 12930853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 24335762 - 24335814
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||||||||||| | |||||||||||| |||| ||||||||| |||||||    
T  24335762 gcttaattacactttcgatccttgcattttgaccagctcacgaaaatggtcat 24335814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 51310050 - 51309998
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||| ||||||||||||| ||||||| |||| ||||||||| |||||||    
T  51310050 gcttaattgcacttttggtcctcgcatttttaccagctcacgaaaatggtcat 51309998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 23986519 - 23986573
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||| |||||||||||||  |||||| |||| ||||||||| |||||||    
T  23986519 atgcttaatttcacttttggtcctcacattttgaccagctcacgaaaatggtcat 23986573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 25938215 - 25938165
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||||  ||||  || ||||||||||||||||    
T  25938215 gcttaattacacttttggtccttgtgttttggcctactcacgaaattggtc 25938165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 28465083 - 28465129
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    ||||||||||||||| |||||| |||||| ||||||| |||||||||    
T  28465083 cttaattacacttttagtccttccattttgaccaacttacgaaattg 28465129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 35193847 - 35193797
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||||||||||| |  | ||||||||| |||||    
T  35193847 gcttaattacacttttggtccttgcattttgataagctcacgaaaatggtc 35193797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 44890512 - 44890570
Alignment:
Q  238 taaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||||||||||||| ||||||||||||  |||| ||| | |||||||| |||||||    
T  44890512 taaaatgcttaattacaattttggtccttgtgttttgacctattcacgaaaatggtcat 44890570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 51641374 - 51641328
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    ||||||||||||||| ||||||||||||  || ||||||||||||||    
T  51641374 cttaattacacttttagtccttgcatttagacaaactcacgaaattg 51641328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 56077869 - 56077819
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||| |||||    
T  56077869 gcttaattacatttttggtcctaccattttgaccaactcacgaaaatggtc 56077819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 2118295 - 2118344
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||||  ||||  || ||||||||||||||||    
T  2118295 cttaattacacttttggtccttgtgttttggcctactcacgaaattggtc 2118344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 6617205 - 6617148
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| ||||| | |||||||||| || ||||||||||||||||| ||| ||||    
T  6617205 ttaattacatttttgctacttgcattttgactaactcacgaaattggtcctacctctt 6617148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 24851317 - 24851366
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||| ||||  |||||| |||||||||||||| ||||    
T  24851317 gcttaattacacttttgatcctaccattttgaccaactcacgaaaatggt 24851366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 26974788 - 26974731
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||||||||||| |  || |||||||||||||| ||| ||||    
T  26974788 ttaattacatttttggtccttgcattttgaataattcacgaaattggtcctacctctt 26974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 229702 - 229654
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||| | ||||||| |||| ||||||||| |||||    
T  229702 ttaattacacttttggtcttcgcattttgaccagctcacgaaaatggtc 229654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 31297230 - 31297182
Alignment:
Q  248 aattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||| |||||||||| || | |||| |||||||||||||||||||||||    
T  31297230 aattgcacttttggttctcgtatttaaaccaactcacgaaattggtcat 31297182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 36168876 - 36168832
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||| ||||||||  |||||| ||||||||||||||    
T  36168876 gcttaattacactcttggtcctaccattttgaccaactcacgaaa 36168832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 25336145 - 25336086
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  25336145 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacttctt 25336086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 4355756 - 4355815
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  4355756 gcttaattacacttttggtccttgcattttgacctactcacgaaattggtcatacctctt 4355815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 6949989 - 6949930
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  6949989 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacatctt 6949930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 20128282 - 20128223
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  20128282 gcttaattacacttttggtccttgcatttttaccaactcacgaaattggtcctacctctt 20128223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 33920605 - 33920672
Alignment:
Q  236 aataaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  33920605 aataaaatggttaattacatttttggtccttgcattttgaccaactcacgaaattgatcatacctctt 33920672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 38007951 - 38008010
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  38007951 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 38008010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 9330338 - 9330281
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  9330338 ttaattacacttttggtccttgcattttgaccaactcacgaaatttgtcatacctctt 9330281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 16175892 - 16175836
Alignment:
Q  247 taattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  16175892 taattacacttttggtccttacatttttaccaactcacgaaattggtcatacctctt 16175836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 16953480 - 16953420
Alignment:
Q  243 tgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||    
T  16953480 tgcttaattacacttttggtccttgcattttgaccaactcatgaaattggtcctacctctt 16953420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 32418160 - 32418219
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||    
T  32418160 gcttaattacacttatggtccttgcattttgaccaactcacgaaattggtcctacctctt 32418219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 43160012 - 43160069
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||    
T  43160012 ttaattacatttttggtccttgcattttgatcaactcacgaaattggtcatacctctt 43160069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 649528 - 649587
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||||| ||| ||||    
T  649528 gcttaattacacttttggtccttgcatcttgaccaacttacgaaattggtcctacctctt 649587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 42192788 - 42192729
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||    
T  42192788 gcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctacctctt 42192729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 43216254 - 43216195
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||| ||| ||||    
T  43216254 gcttaattacacttttagtccttgcgttttgaccaactcacgaaattggtcctacctctt 43216195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 3824251 - 3824201
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  3824251 ttaattatacttttggtcatcgcattttaaccaactcacgaaattggtcat 3824201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 44220190 - 44220136
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatac 298  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||    
T  44220190 gcttaattacactttttgtcctcgcattttgaccaactcacgaaaatggtcatac 44220136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 3822924 - 3822969
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||    
T  3822924 ttaattacacttttggtcctcgcattttaaccaactcatgaaattg 3822969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 5560052 - 5560105
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  5560052 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcata 5560105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 5561083 - 5561038
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  5561083 ttaattacccttttggtccttgcattttaactaactcacgaaattg 5561038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 15550676 - 15550733
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||| ||| ||||    
T  15550676 ttaattacacttttgatccttgcattctgaccaactcacgaaattggtcctacctctt 15550733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 38008501 - 38008446
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||| ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  38008501 aaaaggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 38008446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 42192241 - 42192300
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||| ||| ||||    
T  42192241 gcttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctacctctt 42192300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 62958 - 63008
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||| |||||||| |||||| |||||||||||||| |||||    
T  62958 gcttaattacacttatggtccttccattttgaccaactcacgaaaatggtc 63008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 11539638 - 11539688
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  11539638 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 11539688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 33921157 - 33921107
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  33921157 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 33921107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 649881 - 649832
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  649881 cttaattacacttttggtcctatcattttgaccaactcacgaaaatggtc 649832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 4356301 - 4356248
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||  |||||| |||||||||||| | ||||||||    
T  4356301 gcttaattacacttttggtcctatcattttgaccaactcacgataatggtcata 4356248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 31797327 - 31797270
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||| ||||||||||||||||||||||  |||||| |||| ||||||||| |||||||    
T  31797327 aaaaggcttaattacacttttggtcctcacattttgaccagctcacgaaaatggtcat 31797270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 4809429 - 4809374
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||| ||||||||||||||||||||||  |||||| || ||||||||||| |||||    
T  4809429 aaaaggcttaattacacttttggtcctaccattttgactaactcacgaaaatggtc 4809374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 11540183 - 11540124
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||| | ||||||| |||||||||||||| ||||| ||| ||||    
T  11540183 gcttaattatacttttggtcatcgcattttgaccaactcacgaaaatggtcctacctctt 11540124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 20127732 - 20127787
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||| ||||||||||||||||||||||  |||||| ||||| |||||||| |||||    
T  20127732 aaaaggcttaattacacttttggtcctaccattttgaccaattcacgaaaatggtc 20127787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 1978653 - 1978603
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||||  ||||  || ||||||||||||||||    
T  1978653 gcttaattacacttttggtccttgtgttttggcctactcacgaaattggtc 1978603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 6949444 - 6949502
Alignment:
Q  236 aataaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||| ||||||||||| ||||||||||  |||||| || ||||||||||| |||||    
T  6949444 aataaaaggcttaattacatttttggtcctatcattttgactaactcacgaaaatggtc 6949502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 14942391 - 14942341
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||| | ||||||| |||| ||||||||| |||||    
T  14942391 gcttaattacacttttggtcttcgcattttgaccagctcacgaaaatggtc 14942341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 24140219 - 24140169
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||| |||| |||| || |||||||||||||| |||||    
T  24140219 gcttaattacacttttgttcctcgcatcttgaccaactcacgaaaatggtc 24140169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 28143574 - 28143524
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||| ||||||||||||| ||||||| |||| ||||||||| |||||    
T  28143574 gcttaatttcacttttggtcctcgcattttgaccagctcacgaaaatggtc 28143524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 4808882 - 4808927
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    ||||||||| |||| || |||||||||| |||||||||||||||||    
T  4808882 ttaattacatttttagttcttgcattttgaccaactcacgaaattg 4808927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 63507 - 63459
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||| | |||||||||||| ||||| |||||||||||||| |||||    
T  63507 ttaattatatttttggtccttgtattttgaccaactcacgaaaatggtc 63459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 8425358 - 8425406
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  ||||  || ||||||||||||||||    
T  8425358 ttaattacacttttggtccttgtgttttggcctactcacgaaattggtc 8425406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 16952936 - 16952980
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||| ||||||||||||  |||||| ||||||||||||||    
T  16952936 gcttaattatacttttggtcctaccattttgaccaactcacgaaa 16952980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 17060907 - 17060951
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||| ||||||||||||  |||||| ||||||||||||||    
T  17060907 gcttaattatacttttggtcctaccattttgaccaactcacgaaa 17060951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 44219645 - 44219685
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcac 284  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  44219645 gcttaattacacttttggtccttccattttgatcaactcac 44219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 28254973 - 28254912
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  28254973 atgcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 28254912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 599533 - 599592
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  599533 gcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcatacctctt 599592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 15255854 - 15255913
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  15255854 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 15255913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 18050134 - 18050077
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  18050134 ttaattacatttttggtccttgcattttgaccaactcacgaaattggtcatacctctt 18050077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 9796727 - 9796786
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||    
T  9796727 gcttaattacacttttggtccttgcattttgaccaactcacaaaattggtcctacctctt 9796786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 16578109 - 16578168
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||| ||||    
T  16578109 gcttaattacatttttggttcttgcattttgaccaactcacgaaattggtcctacctctt 16578168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 28877432 - 28877375
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||| |||| ||||    
T  28877432 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggttatacctctt 28877375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 35427357 - 35427308
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  35427357 gcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggt 35427308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 6115656 - 6115597
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||||||| ||||| |||||||| ||||||||||| ||| ||||    
T  6115656 gcttaattatacttttggtccttgtattttgaccaactcgcgaaattggtcctacctctt 6115597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 34799628 - 34799569
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||| |||||| ||||| | |||||||||||| ||| ||||    
T  34799628 gcttaattacacttttggtcctttcattttgaccaattaacgaaattggtcctacctctt 34799569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 41260806 - 41260747
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||| ||||||||| | ||||||||||||||| |||||| ||||    
T  41260806 gcttaattatacttttggtcattgcattttgatcaactcacgaaattgatcatacctctt 41260747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 42035772 - 42035822
Alignment:
Q  243 tgcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||||  |||||| |||||||||||||| ||||    
T  42035772 tgcttaattacacttttggtcctcacattttgaccaactcacgaaaatggt 42035822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 600043 - 599990
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||  |||||| ||||||| |||||| ||||||||    
T  600043 gcttaattacacttttggtcctaccattttgaccaactaacgaaaatggtcata 599990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 18674149 - 18674198
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  18674149 gcttaattacactcttggtccttgcactttgaccaattcacgaaattggt 18674198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 5730818 - 5730862
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||    
T  5730818 gcttaattacacttttggtcctaccattttgaccaactcacgaaa 5730862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 18428305 - 18428257
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  18428305 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 18428257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 9797270 - 9797223
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||||||  |||||| |||||||||||||| ||||    
T  9797270 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggt 9797223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 7910610 - 7910676
Alignment:
Q  237 ataaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||| ||||||||||| ||||||||||  |||||| | |||||||||||| |||| |||| ||||    
T  7910610 ataaaaggcttaattacatttttggtcctcacattttgatcaactcacgaaaatggttatacctctt 7910676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 15256376 - 15256326
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| ||||||||| |||| |||||    
T  15256376 gcttaattacacttttggtcctaccattttgaccaactcatgaaaatggtc 15256326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 41260272 - 41260322
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| ||||||||| |||| |||||    
T  41260272 gcttaattacacttttggtcctaccattttgaccaactcatgaaaatggtc 41260322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 7911161 - 7911112
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||  |||| ||||||| |||||||||||||| ||||    
T  7911161 gcttaattacacttttaatcctcgcattttgaccaactcacgaaaatggt 7911112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 16578641 - 16578592
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||||||||  |||||| || ||||||||||| ||||    
T  16578641 gcttaattacacttttggtcctaccattttgacgaactcacgaaaatggt 16578592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 18049595 - 18049640
Alignment:
Q  248 aattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||    
T  18049595 aattacacttttggtcctaccattttgaccaactcacgaaaatggt 18049640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 28254427 - 28254476
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||  |||||| | |||||||||||| |||||    
T  28254427 cttaattacacttttggtcctaccattttgatcaactcacgaaaatggtc 28254476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 35426845 - 35426893
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||| |||||  |||||| |||||||||||||| |||||    
T  35426845 ttaattacacttttagtcctaccattttgaccaactcacgaaaatggtc 35426893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 35693869 - 35693913
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||||||| |||||||||||| ||||| | ||||||    
T  35693869 gcttaattacacttttgatccttgcattttgaccaatttacgaaa 35693913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 35694421 - 35694373
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||| |||||| || ||||||| ||| |||||    
T  35694421 ttaattacacttttggtccttccattttgactaactcacaaaaatggtc 35694373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 31574275 - 31574211
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  31574275 aaaaggcttaattacacttttggtccttgcattttgaccaactcacgaaattagtcatacctctt 31574211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 31073687 - 31073628
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  31073687 gcttaattacacttttggtccttgcattttgaccagctcacgaaattggtcatacctctt 31073628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 25468852 - 25468903
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  25468852 ttaattacacttttggtccttacattttgaccaactcacgaaattggtcata 25468903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 30250721 - 30250772
Alignment:
Q  243 tgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  30250721 tgcttaattacaattttggtccttgcattttgaccaactcacgaaattggtc 30250772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 5121014 - 5120968
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaatt 290  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5121014 gcttaattacacttttggtccttgcattttgaccaactcacgaaatt 5120968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 28636293 - 28636352
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||||| ||| ||||| |||||||||||||||||||| ||||||||    
T  28636293 gcttaattacatttttggtcattgtattttgaccaactcacgaaattggtcttacttctt 28636352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 32836541 - 32836489
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  32836541 gcttaattacacttttagtccttgcattttgaccagctcacgaaaatggtcat 32836489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 18297733 - 18297682
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||||||||||| ||| | | ||||||||||||||||||||||||||||    
T  18297733 cttaattacacttttagtcttcgaattttaaccaactcacgaaattggtcat 18297682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 22534269 - 22534219
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||| | ||||| |||||||||||||| |||||    
T  22534269 gcttaattacacttttggtcctcgtattttgaccaactcacgaaaatggtc 22534219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 29891081 - 29891140
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| ||||| |||||| || |||| ||||||||| |||||| ||||    
T  29891081 gcttaattacacttttgttccttacattttgactaacttacgaaattgatcatacctctt 29891140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 31470862 - 31470811
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||||||||||||  ||||| || |||||||||| ||||    
T  31470862 atgcttaattacacttttggtccttgtgttttagcctactcacgaaactggt 31470811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 25472558 - 25472508
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||| ||||  |||||| |||||||||||||| |||||    
T  25472558 gcttaattacacttttgatcctaccattttgaccaactcacgaaaatggtc 25472508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 35163737 - 35163683
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||| |||||||||||||||||||||  ||||||| |||| ||||||||| ||||    
T  35163737 aaaaggcttaattacacttttggtccccgcattttgaccagctcacgaaaatggt 35163683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 10900474 - 10900422
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||||||||||||||| | |||||  || |||||||||| |||||||    
T  10900474 gcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcat 10900422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 31573721 - 31573765
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||| ||||||||||||  |||||| ||||||||||||||    
T  31573721 gcttaattatacttttggtcctaccattttgaccaactcacgaaa 31573765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 46013418 - 46013482
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  46013418 aaaaggcttaattacacttttgatccttgcattttgaccaactcacgaaattggtcatacctctt 46013482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 51827958 - 51828008
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51827958 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtc 51828008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 14654734 - 14654686
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattgg 292  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14654734 gcttaattacacttttggtccttgcattttgaccaactcacgaaattgg 14654686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 41998773 - 41998714
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||    
T  41998773 gcttaattacacttttggtccttgcattttgaccaacttacgaaattggtcctacctctt 41998714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 49720372 - 49720431
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||    
T  49720372 gcttaattacacttttgatccttgcattttgaccaactcacgaaattggtcctacctctt 49720431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 49952091 - 49952032
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  49952091 gcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcttacctctt 49952032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 51828534 - 51828599
Alignment:
Q  238 taaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||| ||| ||||    
T  51828534 taaaaggcttaattacacttttggtccttgcattttgaccaaattacgaaattggtcttacctctt 51828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 39010076 - 39010135
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||||||||||||||| |||||||||| |||||| |||||| ||||    
T  39010076 gcttaattacatttttggtccttgcattttgaccaactcacaaaattgctcatacctctt 39010135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 44676473 - 44676532
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||| |||||| ||||    
T  44676473 gcttaattacacttttggtccttgcattttgacaaactcatgaaattgatcatacctctt 44676532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 47431697 - 47431756
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||||||| ||||    
T  47431697 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcatacctctt 47431756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 52375328 - 52375387
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||  |||||||||||| |||||||| ||||||||| ||||    
T  52375328 gcttaattacacttttggtcctcacattttaaccaattcacgaaaatggtcatacctctt 52375387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 52375876 - 52375817
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||    
T  52375876 gcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctacctctt 52375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 43678829 - 43678779
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  43678829 gcttaattacacttttggtccttgcattttgatcaactcacgaacttggtc 43678779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 55390142 - 55390092
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  55390142 gcttaattacacttttggtcctcgcattttaaccaattcacgaaaatggtc 55390092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 16689361 - 16689418
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||| ||| ||||    
T  16689361 ttaattacagttttggtcctagcattttgaccaactcacgaaattggtcctacctctt 16689418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 27200236 - 27200187
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  27200236 gcttaattacacttttggtccttgcattttgaccagctcacgaaaatggt 27200187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 32730392 - 32730449
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||| ||| ||||    
T  32730392 ttaattacacttttggtccttgcattttgaccaactcttgaaattggtcctacctctt 32730449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 40838655 - 40838712
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||| |||| ||||||| |||||||||||||| ||||||||| ||||    
T  40838655 ttaattacacttttgatcctcgcattttgaccaactcacgaaaatggtcatacctctt 40838712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 22370599 - 22370647
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  22370599 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtc 22370647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 49407797 - 49407849
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||| |||||||    
T  49407797 gcttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcat 49407849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 330386 - 330331
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||| |||||||||||| ||||||||| ||||||| |||||||||||||| |||||    
T  330386 aaaaggcttaattacacatttggtcctcgcattttgaccaactcacgaaaatggtc 330331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 36701640 - 36701589
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||| |||||||    
T  36701640 cttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcat 36701589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 40275094 - 40275153
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||| ||| ||||    
T  40275094 gcttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctacctctt 40275153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 44677015 - 44676964
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  44677015 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcata 44676964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 2051296 - 2051346
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  2051296 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 2051346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 49951539 - 49951597
Alignment:
Q  236 aataaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||| | ||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  49951539 aataaaaggtttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 49951597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 51472856 - 51472902
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaatt 290  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  51472856 gcttaattatacttttggtccttgcattttgaccaactcatgaaatt 51472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 52237361 - 52237303
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||  |||||| |||||||||||||| ||||| ||| ||||    
T  52237361 cttaattacacttttggtcctcacattttgaccaactcacgaaaatggtcctacctctt 52237303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 16701337 - 16701284
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||| ||||||||    
T  16701337 gcttaattacatttttggtcctaccattttgaccaactcacgaaaatggtcata 16701284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 30513724 - 30513773
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||| |||||||||||||||||| || ||||||||||| |||||    
T  30513724 cttaattacatttttggtccttgcattttgacaaactcacgaaaatggtc 30513773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 34105190 - 34105145
Alignment:
Q  249 attacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  34105190 attacacttttggtccttgcattttgaccaacttacgaagttggtc 34105145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 40275638 - 40275593
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaat 289  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||    
T  40275638 gcttaattacacttttggtcctcacattttgaccaactcacgaaat 40275593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 43678296 - 43678349
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||  |||||| |||||||||||||  ||||||||    
T  43678296 gcttaattacacttttggtcctaccattttgaccaactcacgaacatggtcata 43678349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 49720906 - 49720853
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||   ||||| |||||||||||||| ||||||||    
T  49720906 gcttaattacacttttggtcctactattttgaccaactcacgaaaatggtcata 49720853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 51828503 - 51828450
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||  || ||| |||||||||||||| ||||||||    
T  51828503 gcttaattacacttttggtcctaccactttgaccaactcacgaaaatggtcata 51828450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 25534886 - 25534950
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||| |||||||||||||||||||||| ||||||| ||||| ||| |||| ||||| ||| ||||    
T  25534886 aaaaggcttaattacacttttggtcctcgcattttgaccaattcatgaaaatggtcctacctctt 25534950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 36701107 - 36701151
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||    
T  36701107 gcttaattacacttttggtcctcgcattttgatcaactcacgaaa 36701151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 37075685 - 37075737
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||   ||||||| |||||||||||||| |||||    
T  37075685 atgcttaattacacttttggtctccgcattttgaccaactcacgaaaatggtc 37075737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 329850 - 329897
Alignment:
Q  247 taattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||| ||| |||||| |||||||||||||| |||||    
T  329850 taattacacttttggttcttccattttgaccaactcacgaaaatggtc 329897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 23644458 - 23644513
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||| |||||||||||||||||||||| | |||||  || ||||||||||||||||    
T  23644458 aaaaggcttaattacacttttggtcctcgtattttggcctactcacgaaattggtc 23644513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 5136983 - 5137033
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||||||||||||| |  ||||  |||||||||||||||||||||    
T  5136983 ttaattacacttttggtcctcgtgttttggccaactcacgaaattggtcat 5137033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 30104483 - 30104533
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||| |  |||| ||| ||||||||||||||||    
T  30104483 gcttaattacacttttggtcctcgtgttttgacctactcacgaaattggtc 30104533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 38535310 - 38535360
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| ||||||||| |||| |||||    
T  38535310 gcttaattacacttttggtcctaccattttgaccaactcaggaaaatggtc 38535360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 38535840 - 38535794
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaatt 290  Q
    ||||||||| ||||||||||| |||||||| ||||||| ||||||||    
T  38535840 gcttaattatacttttggtccgtgcattttgaccaacttacgaaatt 38535794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 41998230 - 41998280
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||| ||||| |||||    
T  41998230 gcttaattacacttttggtcctaccattttgaccaactcgcgaaaatggtc 41998280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 52236818 - 52236876
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||| ||||| ||||||| | ||| |||||||| ||||||||| ||||    
T  52236818 cttaattacacttttagtcctcgcattttgaacaattcacgaaaatggtcatacctctt 52236876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 32730933 - 32730884
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||| |  |||||||||||||||| |||| |||||    
T  32730933 cttaattacacttttggtcataccattttaaccaactcaagaaaatggtc 32730884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 33412699 - 33412650
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||| ||||||| | || ||||||||| ||||    
T  33412699 gcttaattacacttttggtcctcgcattttgatcagctcacgaaaatggt 33412650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 40839195 - 40839138
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||  |||||| || ||||||||||| ||||| ||| ||||    
T  40839195 ttaattacacttttggtcctcacattttgacaaactcacgaaaatggtcttacctctt 40839138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 49408326 - 49408277
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||||| || ||||||| |||| ||||||||| ||||    
T  49408326 gcttaattacacttttggtactcgcattttgaccatctcacgaaaatggt 49408277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 25612519 - 25612471
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||| |  |||| ||| ||||||||||||||||    
T  25612519 ttaattacacttttggtcctcgtgttttgacctactcacgaaattggtc 25612471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 25853235 - 25853287
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||||||||||||||| |  ||||  || ||||||||||||||||||    
T  25853235 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcat 25853287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 26837363 - 26837411
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||| |||||||||||| |||||  || ||||||||||||||||    
T  26837363 ttaattacatttttggtccttgtattttggcctactcacgaaattggtc 26837411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 50901072 - 50901032
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcac 284  Q
    |||||||||||||||||||||| ||||||| |||| |||||    
T  50901072 gcttaattacacttttggtcctcgcattttgaccagctcac 50901032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 51473399 - 51473351
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||| ||||  |||||| |||||||||||||| |||||    
T  51473399 ttaattacacttttgatcctaccattttgaccaactcacgaaaatggtc 51473351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 27245204 - 27245263
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  27245204 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 27245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 39388815 - 39388754
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||    
T  39388815 atgcttaattacacttttggtccttgcattttgaccaactcacgaaatttgtcctacctctt 39388754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 24929853 - 24929794
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  24929853 gcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcttacctctt 24929794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 48247588 - 48247647
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||    
T  48247588 gcttaattacacttttggtccttgcattttgatcaactcacgaaattggtcctacctctt 48247647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 26026320 - 26026377
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||    
T  26026320 ttaattacacttttggtccttgtattttgaccagctcacgaaattggtcatacctctt 26026377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 5333881 - 5333940
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||| ||||    
T  5333881 gcttaattacacttttgatccttgcattttgaccaactcacgaaaatggtcgtacctctt 5333940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 5746185 - 5746138
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  5746185 gcttaattacacttttggtccttgcattttgactaactcacgaaattg 5746138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 7732489 - 7732548
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||||||||||||||| | |||||||||||||||||| ||| ||||    
T  7732489 gcttaattacatttttggtccttgcattttgatcaactcacgaaattggtcctacctctt 7732548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 9181957 - 9181898
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||| ||||    
T  9181957 gcttaattacacttttgatccttgcattttgaccaattcacgaaattgatcatacctctt 9181898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 16081844 - 16081797
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  16081844 gcttaattacacctttggtccttgcattttgaccaactcacgaaattg 16081797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 25637198 - 25637257
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||||| || ||||||||| |||||||||| ||| ||||    
T  25637198 gcttaattacacttttggtccttgcatattgaccaactcatgaaattggtcctacctctt 25637257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 26048491 - 26048432
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| ||||    
T  26048491 gcttaattacacttttgttccttgcgttttgaccaactcacgaaattggtcctacctctt 26048432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 786783 - 786837
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatac 298  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  786783 gcttaattacacttttgatccttccattttgaccaactcacgaaaatggtcatac 786837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 28688046 - 28687985
Alignment:
Q  241 aatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  28688046 aatgtttaattaca-ttttggtccttgcattttgaccaactcacgaaattgatcatacctctt 28687985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 35161342 - 35161288
Alignment:
Q  249 attacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||    
T  35161342 attacacttttggtccttgcattttgaccaactcacggaattggtcctacctctt 35161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 16917714 - 16917767
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  16917714 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcata 16917767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 5184431 - 5184479
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  5184431 ttaattacatttttggtccttggattttgaccaactcacgaaattggtc 5184479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 5745642 - 5745693
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  5745642 ttaattacacttttggtcctatcattttgaccaactcacgaaaatggtcata 5745693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 15712366 - 15712416
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  15712366 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 15712416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 34595317 - 34595267
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  34595317 gcttaattacacttttggtcctcacattttgaccaactcacgaaaatggtc 34595267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 40669751 - 40669697
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatactt 300  Q
    ||||||||||||||| ||||| |||||| |||||||||||||| || ||||||||    
T  40669751 ttaattacacttttgatccttccattttgaccaactcacgaaaatgatcatactt 40669697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 7733037 - 7732988
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    |||| ||||||||||||||||||||||  |||||| ||||||||||||||    
T  7733037 aaaaggcttaattacacttttggtcctaccattttgaccaactcacgaaa 7732988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 9181534 - 9181583
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  9181534 cttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 9181583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 39136687 - 39136736
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||| ||||    
T  39136687 gcttaattacacttttgatccttgcattttgaccagctcacgaaaatggt 39136736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 25637741 - 25637693
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  25637741 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 25637693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 5334363 - 5334320
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    |||||||||||||||||||||  |||||| ||||||||||||||    
T  5334363 cttaattacacttttggtcctcacattttgaccaactcacgaaa 5334320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 11973945 - 11973898
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||| |||||||||||||||||| ||||||  |||||||||||    
T  11973945 ttaattacatttttggtccttgcattttgaccaacgtacgaaattggt 11973898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 34594585 - 34594628
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||||||||||| ||||||| || |||||||||||    
T  34594585 cttaattacacttttggtcctcgcattttgactaactcacgaaa 34594628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 35160660 - 35160707
Alignment:
Q  250 ttacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||||||||||  |||||| |||||||||||||| ||||||||    
T  35160660 ttacacttttggtcctaccattttgaccaactcacgaaaatggtcata 35160707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 14311317 - 14311375
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||| | ||||||| ||||||||||||||||||||  |||||||| |||| ||||    
T  14311317 cttaattatatttttggtacttgcattttaaccaactcataaaattggttatacctctt 14311375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 16081293 - 16081339
Alignment:
Q  237 ataaaatgcttaattacacttttggtccttgcattttaaccaactca 283  Q
    |||||| |||||||||||||||||||||||  ||||| |||||||||    
T  16081293 ataaaaggcttaattacacttttggtccttctattttgaccaactca 16081339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 45815345 - 45815379
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaacca 278  Q
    |||||||||||||||||||||||||||||| ||||    
T  45815345 gcttaattacacttttggtccttgcattttgacca 45815379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 48248137 - 48248087
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||| ||| |||||    
T  48248137 gcttaattacacttttggtcctaccattttgaccaactcacaaaaatggtc 48248087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 787329 - 787272
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||| || | ||||| |||||||||||||| ||||| ||| ||||    
T  787329 ttaattacacttttggtgctcgtattttgaccaactcacgaaaatggtcctacctctt 787272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 2758243 - 2758194
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||| |||||||   |||||||||||| ||||    
T  2758243 gcttaattacacttttggtcctcgcattttgttcaactcacgaaaatggt 2758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 28687594 - 28687643
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||| |  |||||| |||||||||||||| ||||    
T  28687594 gcttaattacacttttggtcatatcattttgaccaactcacgaaaatggt 28687643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 49064035 - 49064084
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||| | ||||| |||| ||||||||| ||||    
T  49064035 gcttaattacacttttggtcctcgtattttgaccagctcacgaaaatggt 49064084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 35578902 - 35578950
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||| ||||||||| |||| ||||| ||| |||||    
T  35578902 ttaattacacttttggtcattgcattttgaccagctcacaaaaatggtc 35578950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 29438931 - 29438990
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  29438931 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctctt 29438990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 16298683 - 16298742
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  16298683 gcttaattacatttttggcccttgcattttgaccaactcacgaaattggtcatacctctt 16298742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 10278550 - 10278596
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  10278550 cttaattacacttttggtccttgcattttgaccaactcacgaaattg 10278596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 50304441 - 50304499
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||    
T  50304441 cttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcatacctctt 50304499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 1837506 - 1837559
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  1837506 gcttaattacacttttggtccttgcattttgatcaactcacgaaattgatcata 1837559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 17641912 - 17641855
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||    
T  17641912 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcatacctctt 17641855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 44802716 - 44802664
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  44802716 gcttaattacacttttggtccttgcattttgaccagctcacgaaagtggtcat 44802664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 23340184 - 23340234
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  23340184 gcttaattacacttttgatcattgcattttgaccaactcacgaaattggtc 23340234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 44582059 - 44582117
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||| ||| ||||    
T  44582059 cttaattacacttttggtccttacattttgaccaactaacgaaattggtcctacctctt 44582117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 34555380 - 34555429
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  34555380 gcttaattacacttttggtccttgcattttgactaactcgcgaaattggt 34555429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 37421163 - 37421220
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||||||| ||| ||||    
T  37421163 ttaattacacttttggtctttgcattttgaccaattcacgaaattggtcttacctctt 37421220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 30786772 - 30786816
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  30786772 gcttaattacacttttggttcttgcattttgaccaactcacgaaa 30786816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 444096 - 444037
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    ||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||| ||||    
T  444096 gcttaattatacttttgatctttgcattttgaccaactcacgaaatttgtcatacctctt 444037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 4080026 - 4080069
Alignment:
Q  248 aattacacttttggtccttgcattttaaccaactcacgaaattg 291  Q
    ||||||||||||||||||||||| || |||||||||||||||||    
T  4080026 aattacacttttggtccttgcatcttgaccaactcacgaaattg 4080069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 45048158 - 45048205
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  45048158 ttaattacacttttggtccttgcattttgaccaacttacgaaaatggt 45048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 9992700 - 9992650
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||||||||||| || |||||| |||| |||||    
T  9992700 gcttaattacacttttggtccttgcattttgacaaactcatgaaaatggtc 9992650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 44954771 - 44954717
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatac 298  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||| || ||||||    
T  44954771 gcttaattacacttttggtcctcgcattttgaccaactcatgaaaatgatcatac 44954717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 37505068 - 37505117
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||    
T  37505068 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggt 37505117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 45048678 - 45048621
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||| ||||||| ||||  |||||||| ||||||||| ||||    
T  45048678 ttaattacacttttggtcctcgcattttgaccagttcacgaaaatggtcatacctctt 45048621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 18984663 - 18984613
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||||  ||||  || ||||||||||||||||    
T  18984663 gcttaattacacttttggtccttgtgttttggcctactcacgaaattggtc 18984613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 39843569 - 39843519
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||| |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  39843569 gctttattacactttcggtcctcgcatttagaccaactcacgaaattggtc 39843519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 50419393 - 50419443
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    |||||| ||||||||||||| |||||| ||||||||||| ||| |||||||    
T  50419393 ttaattgcacttttggtcctcgcatttaaaccaactcacaaaaatggtcat 50419443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 50419805 - 50419755
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||| ||||||||||| | ||||||  ||||||||||||||||||||    
T  50419805 gcttaattgcacttttggtcatcgcatttagaccaactcacgaaattggtc 50419755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 50926786 - 50926736
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||| | ||||||| |||| ||||||||| |||||    
T  50926786 gcttaattacacttttggtcatcgcattttgaccagctcacgaaaatggtc 50926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 25274760 - 25274809
Alignment:
Q  247 taattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||| ||||||||||||| ||||||| |||| ||||||||| |||||||    
T  25274760 taattgcacttttggtcctcgcattttgaccagctcacgaaaatggtcat 25274809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 34555926 - 34555877
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||| |||||  |||||| |||||||||||||| |||||    
T  34555926 cttaattacacttttagtcctaccattttgaccaactcacgaaaatggtc 34555877  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 37505612 - 37505559
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    ||||||||| | |||||||||||  ||||| ||||||||||||||||| |||||    
T  37505612 gcttaattatatttttggtccttttattttgaccaactcacgaaattgatcata 37505559  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 39485068 - 39485125
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||||||||||||||| ||||||| || | ||||||||| ||||| ||| ||||    
T  39485068 ttaattacacttttggtcctcgcattttgactagctcacgaaaatggtcctacctctt 39485125  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 52233739 - 52233788
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||||||||||||||| ||||| |  |||||||||||| |||||||||||    
T  52233739 gcttaattacacttttcgtcctcgggttttaaccaacttacgaaattggt 52233788  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 2867913 - 2867965
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    |||||||||| |||||||| | ||||||| |||||||||||||| || |||||    
T  2867913 cttaattacaattttggtcatcgcattttgaccaactcacgaaaatgatcata 2867965  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 5539815 - 5539867
Alignment:
Q  242 atgcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    |||||||||||||||||||||||| |  ||||  || ||||||||||||||||    
T  5539815 atgcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtc 5539867  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 17088684 - 17088632
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtcat 296  Q
    ||||||||||||||||||||||  |||||| | || ||||||||| |||||||    
T  17088684 gcttaattacacttttggtcctctcattttgaacagctcacgaaaatggtcat 17088632  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 44582603 - 44582551
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtcata 297  Q
    |||||||||||||||||| ||  |||||| | |||||||||||| ||||||||    
T  44582603 cttaattacacttttggttctaccattttgatcaactcacgaaaatggtcata 44582551  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 50305328 - 50305280
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||| ||  |||||||||||||||| |||| |||||    
T  50305328 ttaattacacttttggttctaccattttaaccaactcatgaaaatggtc 50305280  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 52235213 - 52235169
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaa 288  Q
    ||||||||||||||||| ||||   ||||||||||||||||||||    
T  52235213 gcttaattacacttttgatcctcagattttaaccaactcacgaaa 52235169  T

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Target: scaffold0097 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 46813 - 46763
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  46813 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtc 46763  T

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Target: scaffold0097; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 46262 - 46316
Alignment:
Q  239 aaaatgcttaattacacttttggtccttgcattttaaccaactcacgaaattggt 293  Q
    |||| |||||||| ||||||||||||| ||||||| ||||||| |||||| ||||    
T  46262 aaaaggcttaattgcacttttggtcctcgcattttgaccaacttacgaaaatggt 46316  T

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Target: scaffold0712 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 6939 - 6882
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||||||| ||| ||||    
T  6939 ttaattactcttttggtccttgcattttgaccaatttacgaaattggtcttacatctt 6882  T

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Target: scaffold0709 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 6957 - 6900
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacgaaattggtcatacttctt 303  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||||||| ||| ||||    
T  6957 ttaattactcttttggtccttgcattttgaccaatttacgaaattggtcttacatctt 6900  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 210882 - 210832
Alignment:
Q  244 gcttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||||||||||  |||||| ||||||||| |||| |||||    
T  210882 gcttaattacacttttggtcctcacattttgaccaactcatgaaaatggtc 210832  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 205911 - 205862
Alignment:
Q  245 cttaattacacttttggtccttgcattttaaccaactcacgaaattggtc 294  Q
    ||||||||||||||| |||||  |||||| |||||||||||||| |||||    
T  205911 cttaattacacttttagtcctcacattttgaccaactcacgaaaatggtc 205862  T

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Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 204931 - 204971
Alignment:
Q  246 ttaattacacttttggtccttgcattttaaccaactcacga 286  Q
    |||||||||||||||||||||| ||||| |||| |||||||    
T  204931 ttaattacacttttggtccttgtattttgaccagctcacga 204971  T

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