View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_3 (Length: 682)
Name: NF12040_high_3
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 132 - 661
Target Start/End: Original strand, 43383301 - 43383842
Alignment:
| Q |
132 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
231 |
Q |
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| T |
43383301 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
43383400 |
T |
|
| Q |
232 |
ggcattaaccctcctcctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatc |
331 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43383401 |
ggcattaaccctccacctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatc |
43383500 |
T |
|
| Q |
332 |
caaagaacaagaaagc---agcaaaatcaacaacaacggtgatggtcgatgagaatgatcagtttgtgtgttcatgttgtaacaaagtatttggatccca |
428 |
Q |
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| T |
43383501 |
caaagaacaagaaagcaaaagcaaaagcaacaacaacgg---tggtcgatgaggatgatcagtttgtgtgttcgtgttgtaacaaagtatttggatccca |
43383597 |
T |
|
| Q |
429 |
tcaggcacttggaggacatagggctagtcacaagaatgtcaagggctgtttcgccaat------acaacaataaccgcttcttctaattctactactgga |
522 |
Q |
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| T |
43383598 |
tcaggcacttggaggacacagggctagtcacaagaatgtcaagggctgtttcgccaatacaacaacaacaataaccgcttcttctaattctactactgga |
43383697 |
T |
|
| Q |
523 |
aggacattcatgacgcctcacgatgacacaatgactcgtggtggaaac------gtggaaggggaagcggttaataataatgagatgataaactgcatca |
616 |
Q |
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| T |
43383698 |
aggacgttcatgacgcctcacgatgacacaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatca |
43383797 |
T |
|
| Q |
617 |
tcggacacaagtgtagcatatgtttgagggtatttagcactggac |
661 |
Q |
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| T |
43383798 |
tcggacacaagtgtagcatatgtttgagggtatttagcactggac |
43383842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 133 - 483
Target Start/End: Original strand, 25870023 - 25870382
Alignment:
| Q |
133 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagag |
232 |
Q |
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| T |
25870023 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagag |
25870122 |
T |
|
| Q |
233 |
gcattaaccctcctcctaatttcagaagacaacaacttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaa |
329 |
Q |
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| T |
25870123 |
gcattaaccctcctcctaatttcagaagacaacaacaacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaa |
25870222 |
T |
|
| Q |
330 |
tccaaagaacaagaa-agcagca--------aaatcaacaacaacggtgatggtcgatgagaatgatcagtttgtgtgttcatgttgtaacaaagtattt |
420 |
Q |
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| T |
25870223 |
tccaaagaacaagaacaagaacaagaacaagaaaacaacaacaacggtggtggatgatgag---gatcagtttgtgtgttcgtgttgcaacaaagtattt |
25870319 |
T |
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| Q |
421 |
ggatcccatcaggcacttggaggacatagggctagtcacaagaatgtcaagggctgtttcgcc |
483 |
Q |
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| T |
25870320 |
ggatcccatcaggcacttggaggacacagggctagtcacaagaatgtcaagggctgtttcgcc |
25870382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43383185 - 43383282
Alignment:
| Q |
1 |
gataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatgattctgttaatgttactggtaagaagaagcgtaaggaattgggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
43383185 |
gataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatga------tactgttactggtaagaagaagagtaaggaattgggtg |
43383278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 563 - 661
Target Start/End: Original strand, 25870423 - 25870524
Alignment:
| Q |
563 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
659 |
Q |
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|||||||||| |||||||||| |||||||| |||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
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| Q |
660 |
ac |
661 |
Q |
| |
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|| |
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| T |
25870523 |
ac |
25870524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 25869981 - 25870009
Alignment:
| Q |
76 |
aagaagaagcgtaaggaattgggtgggga |
104 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
25869981 |
aagaagaagcgtaaggaattgggtgggga |
25870009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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