View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12040_high_30 (Length: 307)

Name: NF12040_high_30
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12040_high_30
NF12040_high_30
[»] chr1 (1 HSPs)
chr1 (12-306)||(25530962-25531256)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 25530962 - 25531256
Alignment:
Q  12 gagaagaacaactatgaatagataaaggagaacaatttggtgaactatgagcaaatctaacaaataaatcnnnnnnngcatcaataataaatccatgatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||       |||||||||||||||||||||||    
T  25530962 gagaagaacaactatgaatagataaaggagaacaatttggtgaaccatgatcaaatctaacaaataaatcaaaaaaagcatcaataataaatccatgatt 25531061  T
Q  112 tcttttctcattaacttcaaaataccaactcaaaagcttttctagggtttcccaatcgttaataccataagcctccaccatttccacaatagattctttg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25531062 tcttttctcattaacttcaaaataccaactcaaaagcttttctagggtttcccaatcgttaataccataagcctccaccatttccacaatagattctttg 25531161  T
Q  212 aaatcttcgcaaggatttcgcgaatccattgaaaactcaagggtgttctcgaatggtaataataagttgttattattactgctaattatttcatt 306  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  25531162 aaatcttcgcaaggatttcgcgaatccattgaaacctcaagggtgttcttgaatggtaataataagttgttattattgctgctaattatttcatt 25531256  T

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