View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_34 (Length: 249)
Name: NF12040_high_34
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 68 - 248
Target Start/End: Complemental strand, 48097245 - 48097065
Alignment:
| Q |
68 |
ccgaaatggttttttacacctcttttattcaacatgtgattttaatctcattcgttccataatcaaattctagacctcctcataaataaatcatttatgt |
167 |
Q |
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| T |
48097245 |
ccgaaatggttttttacacctcttttattcaacatgtgattttaatctcattcgttccataatcaaattctagacctcctcataaataaatcatttatgt |
48097146 |
T |
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| Q |
168 |
agacgaaggaggactaaaatgtgcaacttttttatgagnnnnnnnnnnctaaattttgcaagtcaaaaatgtttgcacccc |
248 |
Q |
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| T |
48097145 |
agacgaaggaggactaaaatgtgcaacttttttatgagaaaaaaaaaactaaattttgcaagtcaaatatgtttgcacccc |
48097065 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 12016635 - 12016590
Alignment:
| Q |
148 |
cataaataaatcatttatgtagacgaaggaggactaaaatgtgcaa |
193 |
Q |
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| T |
12016635 |
cataaataattcatttgtgtagacgaaagaggactaaaatgtgcaa |
12016590 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 30256302 - 30256244
Alignment:
| Q |
148 |
cataaataaatcatttatgtagacgaaggaggactaaaatgtg-caacttttttatgag |
205 |
Q |
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| T |
30256302 |
cataaataaatcatttatgtagacgaatgatgacaaaaacgtgtaaacttttttatgag |
30256244 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 29969157 - 29969202
Alignment:
| Q |
94 |
attcaacatgtgattttaatctcattcgttccataatcaaattcta |
139 |
Q |
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| T |
29969157 |
attcaacatgtgatattcatctctttcgttccataatcgaattcta |
29969202 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 38576959 - 38576911
Alignment:
| Q |
87 |
ctcttttattcaacatgtgattttaatctcattcgttccataatcaaat |
135 |
Q |
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|||||| |||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
38576959 |
ctctttcattcaacatgtgatttccatctctttcgtaccataatcaaat |
38576911 |
T |
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