View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12040_high_36 (Length: 244)
Name: NF12040_high_36
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 52925383 - 52925624
Alignment:
| Q |
1 |
tccaataagctgtactcaggaccaactgtgcacacctcaaccccttatagtccttcaccattaactccctttctccccacccactagaacaattgctcac |
100 |
Q |
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| T |
52925383 |
tccaataagctgtactcaggaccaactgtgcac--ctcaaccccttatagtccttcaccattaactccctttctccccacccactagaacaattgctcac |
52925480 |
T |
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| Q |
101 |
ccctttaacagtctttcaatcacagtgtatacttttaacagttttcaacattcaaagtcaaacatatctcaattctcagtattgttcaaccacactcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
52925481 |
ccctttaacagtctttcaatcacagtgtatacttttaacagttttcaacattcaaagtcaaacatatctcaattctcaatattgctcaaacacactcaat |
52925580 |
T |
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| Q |
201 |
tgctgattaagcaaatgagttttaagttattctagatttctaat |
244 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
52925581 |
tgctgattaagcaattgagttttaagttattcaagatttctaat |
52925624 |
T |
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