View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12040_high_37 (Length: 242)
Name: NF12040_high_37
Description: NF12040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12040_high_37 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 25531493 - 25531269
Alignment:
| Q |
18 |
aacaaaaacgacaccttattcaaatccatcaacccaacttttgtaggttccaccaacaaagatatcctagaaacttctgactccatattaactgaatttt |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25531493 |
aacataaacgacaccttattcaaatccatcaacccaacttttgtaggttccaccaacaaagatatcctagaaacttctgactccatattaactgaatttt |
25531394 |
T |
|
| Q |
118 |
cttatgagtatttcagatgtaatagtggcaattcgatcgagacaatgatttgcggtttgtgttcggatagacttttcttcaatccaaacgaaacaagctc |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25531393 |
cttatgagtatttcagaggtaatagtggcaattcgatcgagacaatgatttgcggtttgtgtttggatagacttttcttcgatccaaacgaaacaagctc |
25531294 |
T |
|
| Q |
218 |
gatattaaagaccaaagaaataatt |
242 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
25531293 |
gatattaaagaccaaagaaataatt |
25531269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University